{"id":"W2011861577","doi":"10.1038/nsmb.2799","title":"The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity","year":2014,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":451,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; Université de Sherbrooke; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Retrovirus; Biology; Endogenous retrovirus; Embryonic stem cell; Transposable element; Subfamily; Enhancer; RNA; Genetics; Retrotransposon; Cell biology; Stem cell; Non-coding RNA; Genome; Gene; Transcription factor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001830635,0.0001581135,0.0001550295,0.0002577684,0.0002276006,0.0004740667,0.0002021606,0.0002478725,0.001346767],"category_scores_gemma":[0.0003144281,0.0001546719,0.0001613364,0.0001538203,0.0003450329,0.0002542456,0.0004023997,0.0006182536,0.0005675071],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003410114,"about_ca_system_score_gemma":0.0002227166,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003872873,"about_ca_topic_score_gemma":0.0006481286,"domain_scores_codex":[0.9998287,0.00002229009,0.00001193163,0.00003822176,0.00006818907,0.00003066897],"domain_scores_gemma":[0.999726,0.00009486468,0.00006347484,0.00003229447,0.00002539603,0.00005792285],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004620794,0.000005623774,0.0004946431,0.000007538608,0.000002685608,0.00009923249,0.00001564835,0.00008303196,0.9966764,0.0004473915,0.00003469516,0.00208682],"study_design_scores_gemma":[0.00002845287,0.0001924082,0.01421366,0.000009072295,0.00001880894,0.001152272,0.00009498979,0.001820459,0.9741183,0.0007224961,0.007614589,0.00001443904],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892389,0.0006045212,0.007775368,0.000113161,0.00005779088,0.00001255373,0.0003454632,0.0001568606,0.00169547],"genre_scores_gemma":[0.9950604,0.0001552336,0.001823904,0.00005710119,0.00001619204,0.000005091747,0.0005547172,0.00005913364,0.002268274],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001346767,"threshold_uncertainty_score":0.004505396,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009872287061244522,"score_gpt":0.2787313459618474,"score_spread":0.2688590589006029,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}