{"id":"W2011861577","doi":"10.1038/nsmb.2799","title":"The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity","year":2014,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":451,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; Université de Sherbrooke; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Retrovirus; Biology; Endogenous retrovirus; Embryonic stem cell; Transposable element; Subfamily; Enhancer; RNA; Genetics; Retrotransposon; Cell biology; Stem cell; Non-coding RNA; Genome; Gene; Transcription factor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002361533,0.0002026485,0.0002127968,0.00001156288,0.0008697722,0.0001215014,0.0005629648,0.0004260811,0.00005893446],"category_scores_gemma":[0.0000550273,0.00007327548,0.000227681,0.0002249701,0.0001067959,0.00007001383,0.0001404636,0.0003276011,0.00000899403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003650066,"about_ca_system_score_gemma":0.00001028194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007656874,"about_ca_topic_score_gemma":0.0007334406,"domain_scores_codex":[0.9985867,0.0001644958,0.0002393552,0.0004374509,0.0001446432,0.0004274142],"domain_scores_gemma":[0.9993085,0.000160481,0.0001665508,0.0001481511,0.0001319487,0.00008441653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001716196,0.000004870756,0.0007415979,0.000006329479,0.00002311261,0.000001198499,0.00002656768,0.000001694983,0.9578528,0.02186662,0.0001578244,0.01930018],"study_design_scores_gemma":[0.001676866,0.002096182,0.1456085,0.00003965062,0.0001834578,0.00005804435,0.0002022504,0.0007876987,0.549153,0.2159264,0.08296067,0.001307224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937521,0.001328648,0.0002548915,0.003247722,0.0005675021,0.0003519436,0.00007168113,0.00004879785,0.0003766688],"genre_scores_gemma":[0.9978403,0.00001549153,0.0001648802,0.00101481,0.0004401561,0.00002269262,0.0001094626,0.00000254643,0.0003896172],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4086999,"threshold_uncertainty_score":0.6689673,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009872287061244522,"score_gpt":0.2787313459618474,"score_spread":0.2688590589006029,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}