{"id":"W2011900134","doi":"10.1016/j.protis.2010.06.002","title":"Facing Unknowns: Living Cultures (Pirum gemmata gen. nov., sp. nov., and Abeoforma whisleri, gen. nov., sp. nov.) from Invertebrate Digestive Tracts Represent an Undescribed Clade within the Unicellular Opisthokont Lineage Ichthyosporea (Mesomycetozoea)","year":2010,"lang":"en","type":"article","venue":"Protist","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":false,"ca_institutions":"Bamfield Marine Sciences Centre; University of British Columbia","funders":"","keywords":"Biology; Clade; Phylogenetic tree; Phylogenetics; Lineage (genetic); Asexual reproduction; Protist; Ribosomal RNA; Taxon; Zoology; Evolutionary biology; Botany; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000737885,0.0007090789,0.0005618096,0.00008775904,0.0009160023,0.0004434438,0.001174213,0.0006552784,0.00009825302],"category_scores_gemma":[0.0004071278,0.0005811904,0.000200056,0.0002439717,0.0006479413,0.0001151458,0.001038993,0.001073022,0.0000486579],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006124453,"about_ca_system_score_gemma":0.0002658037,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002284153,"about_ca_topic_score_gemma":0.003770533,"domain_scores_codex":[0.996347,0.0002739765,0.0006922696,0.001358772,0.0004798592,0.0008481172],"domain_scores_gemma":[0.997167,0.00007876795,0.000517202,0.001503076,0.0002768266,0.0004571101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000348804,0.0004042099,0.06882034,0.0001350187,0.0003879068,0.000163975,0.002791252,0.000145676,0.9235973,0.0006058519,0.001146045,0.001453607],"study_design_scores_gemma":[0.002760007,0.0006755207,0.2267677,0.0003426858,0.0004281966,0.0003596909,0.002193799,0.00436304,0.7406581,0.0006584047,0.01848263,0.00231018],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920921,0.0015975,0.001562629,0.0005226241,0.0006745299,0.001835589,0.0006584392,0.00009664395,0.0009599242],"genre_scores_gemma":[0.9927289,0.0002314563,0.003726723,0.0005959456,0.0007988733,0.0001104608,0.001094894,0.00008307135,0.0006297104],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1829392,"threshold_uncertainty_score":0.9996639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01545917440217761,"score_gpt":0.2393288906534722,"score_spread":0.2238697162512946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}