{"id":"W2012159765","doi":"10.1038/ismej.2009.95","title":"Phase variation has a role in <i>Burkholderia ambifaria</i> niche adaptation","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; College of Engineering, Michigan State University; Université de Lyon; Fonds Québécois de la Recherche sur la Nature et les Technologies; Armand-Frappier Foundation; Medical School, University of Michigan; Michigan State University","keywords":"Biology; Niche; Adaptation (eye); Variation (astronomy); Phase variation; Ecology; Evolutionary biology; Burkholderia; Ecological niche; Genetics; Bacteria; Phenotype; Habitat; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009092148,0.000100483,0.0001818353,0.0001353976,0.000169572,0.0001225444,0.0001364483,0.00004620177,0.0001704059],"category_scores_gemma":[0.0004545598,0.00006567392,0.00006271825,0.0002881082,0.00004703984,0.0002490058,0.00001432578,0.0005391827,0.00003421422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001430035,"about_ca_system_score_gemma":0.0002346734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005003049,"about_ca_topic_score_gemma":0.00002003819,"domain_scores_codex":[0.9986302,0.0001413823,0.0003287375,0.0001199183,0.0005007723,0.0002790407],"domain_scores_gemma":[0.9993289,0.0001095573,0.0001328419,0.0001901251,0.0001106043,0.0001280291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002508672,0.001522709,0.0002218296,0.00001647692,0.000061684,0.0001401402,0.00640338,0.001804009,0.7736439,0.0006058245,0.004797198,0.2082741],"study_design_scores_gemma":[0.07261638,0.01557728,0.3901655,0.00128336,0.0004760775,0.006552225,0.005646049,0.2666303,0.03875777,0.1283311,0.07300359,0.0009603911],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9307906,0.001419453,0.02510391,0.03963715,0.0002677517,0.0005817273,0.000005048626,0.00004811332,0.002146215],"genre_scores_gemma":[0.9947026,0.00009818338,0.003802764,0.0007059924,0.0004139934,0.00000515741,0.00000442207,0.00001011521,0.0002567501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7348862,"threshold_uncertainty_score":0.2678105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03659562327292819,"score_gpt":0.3343271385809143,"score_spread":0.2977315153079861,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}