{"id":"W2012236741","doi":"10.1145/1854776.1854841","title":"Using Fourier phase analysis on genomic sequences to identify retroviruses","year":2010,"lang":"en","type":"article","venue":"","topic":"Fractal and DNA sequence analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"","keywords":"Randomness; Computational biology; Fourier transform; Computer science; Coding region; DNA; Set (abstract data type); Coding (social sciences); Sequence (biology); Algorithm; Genetics; Biology; Gene; Mathematics; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003561175,0.0002458655,0.0003019834,0.001104396,0.0001814212,0.0003202522,0.0001763403,0.0003096758,0.0005263581],"category_scores_gemma":[0.001442982,0.0001029456,0.0002713281,0.0004881504,0.0003256565,0.0004460228,0.0001956105,0.0002708949,0.0002131683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001536122,"about_ca_system_score_gemma":0.0001777648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000630417,"about_ca_topic_score_gemma":0.0006829264,"domain_scores_codex":[0.9998764,0.00003184916,0.000007246726,0.00002724561,0.0000385857,0.00001862368],"domain_scores_gemma":[0.9992248,0.0004933452,0.00009983064,0.00005486673,0.00009872574,0.00002843998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0004251278,0.0001637169,0.02374891,0.000168482,0.00006845085,0.0003835359,0.0001695264,0.148142,0.3330146,0.005814339,0.001273109,0.4866282],"study_design_scores_gemma":[0.00001699273,0.000129961,0.01374136,0.00001356066,0.00002075281,0.0004140871,0.00005390091,0.9483916,0.03086613,0.005199652,0.001130862,0.00002110238],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6053308,0.0004171788,0.3919078,0.0001634047,0.00004290886,0.0000385789,0.0001864059,0.0005166227,0.001396266],"genre_scores_gemma":[0.8727041,0.0002303331,0.1259891,0.00003124973,0.00005422743,0.00002591687,0.0003704776,0.00003190792,0.0005627718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001104396,"threshold_uncertainty_score":0.001883388,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03326056723061281,"score_gpt":0.3726458916195065,"score_spread":0.3393853243888937,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}