{"id":"W2012416775","doi":"10.1093/cid/ciq237","title":"Clinical and Microbiologic Outcomes in Patients Receiving Treatment for Mycobacterium abscessus Pulmonary Disease","year":2011,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":430,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Alberta Health Services","funders":"","keywords":"Medicine; Mycobacterium abscessus; Bronchiectasis; Sputum culture; Sputum; Antibiotics; Surgery; Internal medicine; Retrospective cohort study; Respiratory disease; Medical record; Mycobacterium; Lung; Tuberculosis; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003633447,0.0002807919,0.0008564064,0.0001307651,0.0000894551,0.0000309808,0.00009536845,0.0001847957,0.0001642216],"category_scores_gemma":[0.004079324,0.000201531,0.0005158101,0.0001144407,0.0003729991,0.0001231095,0.0001122456,0.0001947874,0.00004074401],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007303883,"about_ca_system_score_gemma":0.0001778355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000625608,"about_ca_topic_score_gemma":0.00003411014,"domain_scores_codex":[0.997485,0.0002856208,0.0009499344,0.0006838517,0.0001166024,0.0004789403],"domain_scores_gemma":[0.996498,0.001692486,0.0001607049,0.0004163794,0.0001510223,0.001081343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001885308,0.009643334,0.9644181,0.0001397604,0.0001361625,0.0000776941,0.00001423153,5.730033e-8,0.000004100779,0.00001365284,0.0003335431,0.02333402],"study_design_scores_gemma":[0.006090412,0.003617886,0.9883588,0.00009222054,0.0003281962,0.000001394937,0.000009903076,0.00001474341,0.000005083999,0.0004412485,0.0008261561,0.0002139765],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965035,0.0003833473,0.000006682122,0.0001748858,0.0005899838,0.001418996,0.0003050448,0.0001118107,0.000505735],"genre_scores_gemma":[0.9966359,0.00152565,0.00006523324,0.0007437324,0.0002638245,0.000336086,0.0002272995,0.00003100228,0.0001712955],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02394064,"threshold_uncertainty_score":0.8218195,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08237177643255766,"score_gpt":0.3838007089888734,"score_spread":0.3014289325563158,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}