{"id":"W2012875810","doi":"10.3168/jds.2014-8101","title":"High herd-level prevalence of Mycobacterium avium subspecies paratuberculosis in Western Canadian dairy farms, based on environmental sampling","year":2014,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"SaskTel (Canada); Alberta Milk; University of Calgary","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency","keywords":"Herd; Paratuberculosis; Mycobacterium avium subspecies paratuberculosis; Veterinary medicine; Animal science; Livestock; Biology; Geography; Agricultural science; Mycobacterium; Ecology; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011346,0.00038233,0.0002766808,0.001514215,0.001253681,0.0008698542,0.0008415952,0.0002845972,0.000407001],"category_scores_gemma":[0.002301485,0.0003964117,0.0002683106,0.002091407,0.0007007993,0.0002238637,0.0004614048,0.0002685187,0.00008319879],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01403181,"about_ca_system_score_gemma":0.01068364,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9880431,"about_ca_topic_score_gemma":0.995473,"domain_scores_codex":[0.9987539,0.0001266023,0.00006214238,0.0002446229,0.0006221297,0.0001905912],"domain_scores_gemma":[0.9984664,0.0001927996,0.0002292657,0.00006526766,0.0008610732,0.00018529],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004633501,0.00001330081,0.9945633,0.00001871743,0.00004866971,0.00004848098,0.000327224,0.0004955571,0.000989486,0.00002503628,0.000111864,0.003312058],"study_design_scores_gemma":[0.00000182271,0.00001367429,0.998838,0.00000564756,0.00001514036,0.00003112394,0.0002643608,0.0005711754,0.0001127153,0.000006530899,0.0001353295,0.000004418488],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981796,0.0001712007,0.0003464481,0.0000270198,0.000001556222,0.00003093342,0.0005223128,0.000008845517,0.000712192],"genre_scores_gemma":[0.9983637,0.0001665748,0.0007185595,0.00002464604,0.000001082413,0.00001092542,0.0004292917,0.000002532182,0.0002826443],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01403181,"threshold_uncertainty_score":0.1018084,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03299815934996599,"score_gpt":0.2839072802726587,"score_spread":0.2509091209226927,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}