{"id":"W2012890157","doi":"10.1128/jb.00393-12","title":"Genome Sequence of Shigella flexneri Serotype 5a Strain M90T Sm","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Shigella flexneri; Biology; Serotype; Shigella; Whole genome sequencing; Microbiology; Strain (injury); Genome; Genetics; Enterobacteriaceae; Virology; Bacteria; Gene; Salmonella; Escherichia coli; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000652603,0.0001299774,0.0003228264,0.00006630627,0.00004394146,0.000006426473,0.0002854183,0.00015379,0.00007362751],"category_scores_gemma":[0.000275177,0.0001047355,0.000127284,0.00007945401,0.0002201238,0.00001083016,0.0001653592,0.0002064082,0.000006551396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002514542,"about_ca_system_score_gemma":0.000133793,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006423402,"about_ca_topic_score_gemma":0.00000770612,"domain_scores_codex":[0.9987967,0.0001925525,0.0004102656,0.0001156335,0.000129176,0.0003556883],"domain_scores_gemma":[0.9990093,0.00003413608,0.0003535546,0.0002021597,0.0002594295,0.0001414566],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001680139,0.0000623313,0.018982,0.00002584149,0.0001530363,0.000006834391,0.0001111707,0.00001069809,0.9797298,0.00005521151,0.0001191056,0.0005758964],"study_design_scores_gemma":[0.00134477,0.003872813,0.647698,0.00005282149,0.00007409058,0.0007587072,0.0004018281,0.000008539529,0.1438917,0.000150112,0.2013066,0.0004400029],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963917,0.002093368,0.0001391902,0.0001987198,0.0003526496,0.00007499318,0.00003597969,0.000002276649,0.0007111316],"genre_scores_gemma":[0.9967477,0.0009027508,0.001331128,0.0001070196,0.0006407043,0.000002913408,0.0000167647,0.00001436443,0.0002366458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8358382,"threshold_uncertainty_score":0.4270988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03538235006188494,"score_gpt":0.3158357980261288,"score_spread":0.2804534479642438,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}