{"id":"W2013194636","doi":"10.1007/s00239-007-9062-4","title":"Topological Estimation Biases with Covarion Evolution","year":2007,"lang":"en","type":"article","venue":"Journal of Molecular Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Phylogenetic tree; Biology; Maximum likelihood; Limiting; Phylogenetics; Estimation; Tree (set theory); Evolutionary biology; Sequence (biology); Network topology; Taxon; Process (computing); Phylogenetic comparative methods; Computational biology; Statistics; Computer science; Ecology; Genetics; Mathematics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02045432,0.0007640629,0.0009692088,0.001949794,0.00107453,0.003627684,0.001894327,0.002408877,0.005436725],"category_scores_gemma":[0.1941573,0.0009008195,0.0007249577,0.002692624,0.003093959,0.007026146,0.003318426,0.002540839,0.000604049],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001499275,"about_ca_system_score_gemma":0.0008947946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001216401,"about_ca_topic_score_gemma":0.001545129,"domain_scores_codex":[0.9905574,0.006109925,0.0003752139,0.001468435,0.001013179,0.0004758015],"domain_scores_gemma":[0.8063155,0.1631794,0.007701366,0.01564477,0.005543828,0.001615198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001397024,0.0001425704,0.2026697,0.000448893,0.001061634,0.0009885587,0.00162627,0.2139327,0.0111907,0.3477073,0.005622567,0.2132121],"study_design_scores_gemma":[0.00006831082,0.000110986,0.03205528,0.00007881837,0.0002201433,0.0007962268,0.0002277032,0.5342495,0.005062472,0.4253824,0.001654717,0.00009338309],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5587175,0.001152099,0.4297068,0.003133465,0.0002385321,0.00004034143,0.0002883556,0.0007951346,0.005927712],"genre_scores_gemma":[0.9745913,0.0001832388,0.02343168,0.0002042467,0.0001370198,0.00002456194,0.0002083826,0.0002413758,0.000978356],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02045432,"threshold_uncertainty_score":0.1081741,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01064609780969365,"score_gpt":0.2513510780336207,"score_spread":0.240704980223927,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}