{"id":"W2013256585","doi":"10.1371/journal.pone.0032684","title":"Pentachlorophenol Induction of the Pseudomonas aeruginosa mexAB-oprM Efflux Operon: Involvement of Repressors NalC and MexR and the Antirepressor ArmR","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Operon; Repressor; Pentachlorophenol; Efflux; Effector; Biology; Pseudomonas aeruginosa; Microbiology; Plasmid; Cell biology; Transcription factor; Mutant; Biochemistry; DNA; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003341904,0.0001219644,0.0002240352,0.00002165638,0.00007040976,0.000009741196,0.0001904636,0.0001711441,0.0000105242],"category_scores_gemma":[0.00007469208,0.00007329122,0.0000476889,0.00006446879,0.0005187328,0.0000049354,0.0004245591,0.0001005835,4.85468e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004597152,"about_ca_system_score_gemma":0.0000145572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006139853,"about_ca_topic_score_gemma":0.00000980915,"domain_scores_codex":[0.9991114,0.0001093272,0.0002406436,0.000216614,0.0001512585,0.0001707896],"domain_scores_gemma":[0.9992256,0.00001533304,0.0001817207,0.0004725764,0.00006589334,0.00003889501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001162533,0.0002887451,0.01381812,0.00006506358,0.0002220274,5.632258e-8,0.0001836139,8.167052e-7,0.9841453,0.0002724933,0.00002266695,0.0008648084],"study_design_scores_gemma":[0.0009204599,0.000138748,0.02190447,0.0000403087,0.0001546569,0.000004195744,0.0001205435,0.00001036697,0.9761917,0.00008898431,0.0003384286,0.00008713096],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995988,0.002740137,0.000008856843,0.000615874,0.0001063552,0.0003907325,0.00001641762,0.000004539404,0.0001290903],"genre_scores_gemma":[0.9979134,0.001411165,0.0003210684,0.00007305087,0.0001521962,0.00002317465,0.000009379323,0.00001164021,0.00008491302],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008086348,"threshold_uncertainty_score":0.2988729,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02419517648951099,"score_gpt":0.214015258743524,"score_spread":0.189820082254013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}