{"id":"W2013427745","doi":"10.1128/jb.01290-10","title":"Complete Genome Sequence of Adherent Invasive <i>Escherichia</i> <i>coli</i> UM146 Isolated from Ileal Crohn's Disease Biopsy Tissue","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Escherichia coli; Crohn's disease; Genome; Microbiology; Pathogen; Ileum; Whole genome sequencing; Gene; Gastrointestinal tract; Disease; Genetics; Pathology; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001751335,0.0006408289,0.0007556267,0.001241143,0.0005720647,0.0005288649,0.0004882386,0.0007485645,0.002653138],"category_scores_gemma":[0.0006351679,0.0002718587,0.0006186279,0.002394619,0.0002371233,0.0002631972,0.0002971281,0.0008058951,0.002439054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003413209,"about_ca_system_score_gemma":0.001114989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009512516,"about_ca_topic_score_gemma":0.008967905,"domain_scores_codex":[0.9998275,0.00002076521,0.00001998816,0.00004736201,0.0000543941,0.00002997034],"domain_scores_gemma":[0.9995775,0.0000922816,0.0001127377,0.00003800304,0.0001001342,0.00007941799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001536976,0.0001680364,0.005752277,0.001513002,0.00006898836,0.00103862,0.0003766432,0.0006742767,0.9620152,0.000370215,0.006964827,0.01952097],"study_design_scores_gemma":[0.0003044189,0.001492559,0.530017,0.0006795091,0.0007494818,0.004892258,0.0009147954,0.002333459,0.2133471,0.0007543731,0.2442792,0.000235828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.4637289,0.006223442,0.01233728,0.0006527743,0.0002824583,0.00040014,0.5074047,0.0006477803,0.008322356],"genre_scores_gemma":[0.1567657,0.002439061,0.01864417,0.0002481289,0.00005609148,0.0001963518,0.8164565,0.000207987,0.00498596],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.009512516,"threshold_uncertainty_score":0.01891428,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0193007401594258,"score_gpt":0.2772095630871305,"score_spread":0.2579088229277047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}