{"id":"W2013427745","doi":"10.1128/jb.01290-10","title":"Complete Genome Sequence of Adherent Invasive <i>Escherichia</i> <i>coli</i> UM146 Isolated from Ileal Crohn's Disease Biopsy Tissue","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Escherichia coli; Crohn's disease; Genome; Microbiology; Pathogen; Ileum; Whole genome sequencing; Gene; Gastrointestinal tract; Disease; Genetics; Pathology; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002830595,0.0002625576,0.0005680353,0.00008484798,0.00008517507,0.00002356884,0.000602561,0.0002040576,0.0001493368],"category_scores_gemma":[0.0005151109,0.0002223852,0.0001988635,0.0001395817,0.0005137473,0.00001605549,0.0003300981,0.0005607189,0.00001448117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002366395,"about_ca_system_score_gemma":0.0004983583,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009709591,"about_ca_topic_score_gemma":0.0001119778,"domain_scores_codex":[0.9981226,0.00024518,0.0006988174,0.0003240328,0.0002116381,0.000397773],"domain_scores_gemma":[0.9978623,0.0001061506,0.0006939676,0.0004269199,0.0005777203,0.0003329823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001030499,0.0001346812,0.00482186,0.00003568796,0.000278952,0.0002098011,0.00007456308,0.0000130525,0.9927561,0.00001434706,0.0003223426,0.0003081001],"study_design_scores_gemma":[0.003057079,0.003597751,0.7410728,0.000115452,0.0002247315,0.0002737051,0.0001520152,0.00006574159,0.1305831,0.0003776132,0.1196733,0.0008066937],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970242,0.0007176421,0.0002696677,0.0004224759,0.0007146948,0.0002191345,0.0004965378,0.000006302976,0.0001292876],"genre_scores_gemma":[0.9957665,0.0007567857,0.002160441,0.0003815911,0.0006376666,0.00001357916,0.0001361916,0.00003119241,0.0001160396],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.862173,"threshold_uncertainty_score":0.9068604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0193007401594258,"score_gpt":0.2772095630871305,"score_spread":0.2579088229277047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}