{"id":"W2013578732","doi":"10.1086/497400","title":"Genomic Adaptation to Acidic Environment: Evidence from<i>Helicobacter pylori</i>","year":2005,"lang":"en","type":"article","venue":"The American Naturalist","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Exaptation; Biology; Mechanism (biology); Helicobacter pylori; Adaptation (eye); Campylobacter jejuni; Microbiology; Helicobacter; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002572222,0.000174454,0.000166891,0.0006239128,0.0003691854,0.0003110351,0.0002176687,0.0004758103,0.00137005],"category_scores_gemma":[0.0008383575,0.0001185815,0.0001718613,0.0005509807,0.0006700078,0.000187663,0.0005638102,0.0003519558,0.000181692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001143437,"about_ca_system_score_gemma":0.0001420323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001230821,"about_ca_topic_score_gemma":0.0013631,"domain_scores_codex":[0.9998543,0.00003310771,0.00001084422,0.00004436187,0.00003032666,0.00002701776],"domain_scores_gemma":[0.9993541,0.000210047,0.0001730286,0.00007270794,0.00008441559,0.0001056866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001653802,0.0001210403,0.3208988,0.0009628562,0.0003164479,0.003214231,0.002538382,0.0005414336,0.602518,0.002316971,0.0009219217,0.06399622],"study_design_scores_gemma":[0.00003568786,0.0004500991,0.9629752,0.00005893766,0.0001957404,0.004151418,0.0008641681,0.0001838677,0.01939489,0.001094773,0.01057423,0.00002081094],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902762,0.003236257,0.001017685,0.0004384952,0.00002760513,0.00001288846,0.0004663401,0.00002477769,0.004499746],"genre_scores_gemma":[0.9955309,0.002051848,0.0007981692,0.0004925953,0.00005456463,0.000009168105,0.000666286,0.000008199605,0.0003882555],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00137005,"threshold_uncertainty_score":0.00458324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02243635362487654,"score_gpt":0.263726973011465,"score_spread":0.2412906193865884,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}