{"id":"W2013578732","doi":"10.1086/497400","title":"Genomic Adaptation to Acidic Environment: Evidence from<i>Helicobacter pylori</i>","year":2005,"lang":"en","type":"article","venue":"The American Naturalist","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Exaptation; Biology; Mechanism (biology); Helicobacter pylori; Adaptation (eye); Campylobacter jejuni; Microbiology; Helicobacter; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002044016,0.0002735685,0.0004363067,0.00009357352,0.0001650928,0.00002823858,0.0003240168,0.00005023168,0.0001494235],"category_scores_gemma":[0.0001711862,0.0001896152,0.0001104257,0.0002854702,0.000660646,0.000156209,0.0001860115,0.0004869374,0.002443541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003516327,"about_ca_system_score_gemma":0.00003173936,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001721716,"about_ca_topic_score_gemma":0.0003133401,"domain_scores_codex":[0.9982453,0.0001455127,0.0003515332,0.0004718506,0.0003201014,0.0004657219],"domain_scores_gemma":[0.9985961,0.0002223791,0.0002161319,0.0007061458,0.0000614942,0.0001977022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00642615,0.0003654169,0.3624006,0.00002871709,0.002243761,0.0001136929,0.01864758,0.001229006,0.3580352,0.0000465411,0.03872446,0.2117389],"study_design_scores_gemma":[0.0007782177,0.0004895465,0.9414358,0.00009179029,0.0003694526,0.00005715714,0.0008405574,0.0003158133,0.002386361,0.00001109067,0.05296984,0.0002543585],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9143695,0.0008713139,0.0002385227,0.08370978,0.0001531572,0.0004116549,0.00003151136,0.00009582846,0.000118745],"genre_scores_gemma":[0.9707217,0.0007453497,0.003119345,0.02405456,0.000652231,0.00005548732,0.0000342313,0.00003839103,0.0005787522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5790352,"threshold_uncertainty_score":0.9983332,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02243635362487654,"score_gpt":0.263726973011465,"score_spread":0.2412906193865884,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}