{"id":"W2013910305","doi":"10.1186/1742-4690-11-s1-p132","title":"Endogenous retroviral long terminal repeats as host gene promoters in normal and cancer cells","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Long terminal repeat; Biology; Promoter; Endogenous retrovirus; Enhancer; Gene; Genetics; Epigenetics; Carcinogenesis; DNA methylation; Regulation of gene expression; Gene expression; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003668329,0.0001773806,0.0002757459,0.0003970884,0.0001835385,0.000701561,0.000371515,0.0002794893,0.001266482],"category_scores_gemma":[0.0002809005,0.0001654856,0.0002201867,0.0003835612,0.0002887928,0.000469867,0.0003257338,0.0006694389,0.0008997738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00051305,"about_ca_system_score_gemma":0.0003463274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004557102,"about_ca_topic_score_gemma":0.0007550882,"domain_scores_codex":[0.9995564,0.00006742804,0.00002751819,0.0001087242,0.0001854681,0.00005437764],"domain_scores_gemma":[0.9998248,0.00004313611,0.00002212842,0.00004011363,0.00003533651,0.00003456613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001673736,0.00004902487,0.0008020502,0.0001189275,0.000008788033,0.0001080199,0.0001081741,0.0003166394,0.9871269,0.00264045,0.0002827867,0.008270922],"study_design_scores_gemma":[0.00003577566,0.000376347,0.004964559,0.00003077943,0.00003653436,0.0008639741,0.000141335,0.005937682,0.9340177,0.001404894,0.05216577,0.00002469776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.865438,0.03510718,0.07721074,0.0005714039,0.0003287897,0.0002039152,0.004146552,0.001524116,0.01546922],"genre_scores_gemma":[0.951356,0.007437715,0.0255763,0.0002629688,0.00007731053,0.0001436404,0.004363197,0.0001963527,0.01058654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001266482,"threshold_uncertainty_score":0.004236817,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01302341042627921,"score_gpt":0.2108580971181997,"score_spread":0.1978346866919204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}