{"id":"W2013910305","doi":"10.1186/1742-4690-11-s1-p132","title":"Endogenous retroviral long terminal repeats as host gene promoters in normal and cancer cells","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Long terminal repeat; Biology; Promoter; Endogenous retrovirus; Enhancer; Gene; Genetics; Epigenetics; Carcinogenesis; DNA methylation; Regulation of gene expression; Gene expression; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001566462,0.0001310502,0.0001914646,0.00002012733,0.0001193658,0.00002559702,0.000142029,0.0001436697,0.000301371],"category_scores_gemma":[0.00003193292,0.00006065051,0.00004259962,0.0001428315,0.00009158567,0.00005383369,0.00008505056,0.0001426327,0.00003174197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002874584,"about_ca_system_score_gemma":0.00001214224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001517683,"about_ca_topic_score_gemma":0.002419646,"domain_scores_codex":[0.9988832,0.0001163186,0.0001960132,0.0003486073,0.0001043989,0.0003513986],"domain_scores_gemma":[0.9996619,0.00008456183,0.00007158768,0.00006590001,0.00001931712,0.00009672948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003583204,0.00004241678,0.1337822,0.000004333437,0.000006008124,0.00003820529,0.00009987845,0.000006630714,0.8342025,0.00004730048,0.000009740863,0.03172496],"study_design_scores_gemma":[0.0003826084,0.001398504,0.9542223,0.000008643306,0.00001895566,0.0002458768,0.00002330862,0.000213897,0.04050925,0.0002154091,0.002543915,0.0002173029],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976974,0.0001967246,0.000002944551,0.001010114,0.0001506909,0.0001512629,0.00002323725,0.00002484054,0.0007427441],"genre_scores_gemma":[0.9987683,0.0001234668,0.00007623521,0.0004504049,0.0003085721,0.00002125867,0.00002026343,0.000001361078,0.0002301553],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8204402,"threshold_uncertainty_score":0.3299801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01302341042627921,"score_gpt":0.2108580971181997,"score_spread":0.1978346866919204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}