{"id":"W2014135523","doi":"10.4137/cin.s19435","title":"A Pan-Cancer Analysis of Alternative Splicing Events Reveals Novel Tumor-Associated Splice Variants of Matriptase","year":2014,"lang":"en","type":"article","venue":"Cancer Informatics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Centre for Drug Research and Development; BC Cancer Agency","funders":"National Cancer Institute; National Research Council Canada; Mitacs","keywords":"Transcriptome; Biology; Alternative splicing; RNA splicing; splice; Gene; Exon; Exon skipping; Computational biology; Cancer research; Genetics; Gene expression; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005079804,0.0001473558,0.0004194215,0.0001844762,0.00004586745,0.000008271973,0.0003040865,0.00008356767,0.00003506421],"category_scores_gemma":[0.0002776981,0.0001339311,0.0001675098,0.000560066,0.00005477291,0.00001614313,0.0001296031,0.00009846003,0.000001693137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005795898,"about_ca_system_score_gemma":0.0001193198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009040766,"about_ca_topic_score_gemma":0.0001866463,"domain_scores_codex":[0.998573,0.00004197517,0.0006414477,0.0001313247,0.0003195445,0.0002926835],"domain_scores_gemma":[0.9985078,0.00003872021,0.000665392,0.0003471842,0.0003465418,0.00009434501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001716272,0.0001542502,0.06027222,0.0003618915,0.002667425,5.308371e-7,0.0008697994,0.01169018,0.918659,0.0001693657,0.0007511484,0.004232569],"study_design_scores_gemma":[0.005170918,0.0007624322,0.1990376,0.0008579739,0.002065456,0.000003909893,0.001236934,0.2686313,0.5192916,0.0001390778,0.001866587,0.0009362109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892745,0.0002029189,0.009348075,0.00002029776,0.00007835832,0.000178601,0.0004246676,0.000005045507,0.0004675554],"genre_scores_gemma":[0.9980973,0.00044271,0.0007118139,0.0002341061,0.00005659977,0.00003204446,0.00009814908,0.00001335133,0.0003139317],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3993674,"threshold_uncertainty_score":0.546155,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01900116330183343,"score_gpt":0.3147128533641265,"score_spread":0.295711690062293,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}