{"id":"W2014348387","doi":"10.1159/000224636","title":"Genome Scan, Fine-Mapping, and Candidate Gene Analysis of Non-Syndromic Cleft Lip with or without Cleft Palate Reveals Phenotype-Specific Differences in Linkage and Association Results","year":2009,"lang":"en","type":"article","venue":"Human Heredity","topic":"Cleft Lip and Palate Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"ca_institutions":"Children's & Women's Health Centre of British Columbia; BC Research (Canada); University of British Columbia","funders":"National Center for Research Resources; National Institute of Dental and Craniofacial Research; March of Dimes Foundation; National Institutes of Health; National Human Genome Research Institute; Johns Hopkins University; Hope Foundation","keywords":"Candidate gene; Genetics; Single-nucleotide polymorphism; Genome-wide association study; Phenotype; Genetic linkage; Genome; Genetic association; Linkage (software); Biology; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005430648,0.0001768049,0.0004485796,0.0001856048,0.0001133216,0.00004877028,0.0001300719,0.0001906479,0.00002578769],"category_scores_gemma":[0.00004858431,0.0001410303,0.00004829176,0.0003145478,0.0001032739,0.000008835445,0.00006236052,0.0001674185,0.000001040486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003846903,"about_ca_system_score_gemma":0.00004677119,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002523939,"about_ca_topic_score_gemma":0.004918541,"domain_scores_codex":[0.9985373,0.0001113939,0.000373724,0.0004664061,0.0002141124,0.0002970555],"domain_scores_gemma":[0.9991998,0.0000359377,0.0002298263,0.0003055139,0.0001203828,0.0001085296],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000236442,0.00005552423,0.7991121,0.00002526885,0.000203801,0.00000782288,0.0003561374,0.00001049862,0.1993635,0.000002540623,0.00007750202,0.0005488739],"study_design_scores_gemma":[0.001120065,0.0004617843,0.9964888,0.00003762533,0.00007940227,0.000003050339,0.00003900148,0.0002174081,0.001088203,0.00002621056,0.0002533071,0.0001851491],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990854,0.0001066891,0.00004071319,0.00007241405,0.00002359849,0.000218856,0.0001186871,0.000007236386,0.0003264663],"genre_scores_gemma":[0.9978871,0.0009113827,0.000127794,0.00002317981,0.0001823785,0.000004659254,0.0002377418,0.00001082639,0.0006149494],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1982753,"threshold_uncertainty_score":0.5751048,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02629556798395929,"score_gpt":0.2794754490371429,"score_spread":0.2531798810531836,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}