{"id":"W2014439672","doi":"10.1101/gr.115956.110","title":"<i>Alu</i> repeat discovery and characterization within human genomes","year":2010,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Genome British Columbia; National Human Genome Research Institute; Howard Hughes Medical Institute","keywords":"Alu element; Retrotransposon; Biology; Genome; Human genome; Genetics; Computational biology; DNA sequencing; Evolutionary biology; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005540907,0.0000743985,0.00008678737,0.00002200699,0.0005789725,0.0002297972,0.0001771847,0.00007360227,0.0004275521],"category_scores_gemma":[0.00003163122,0.00003013527,0.00002630576,0.0002965815,0.0001198931,0.0001429311,0.0001607894,0.000256978,0.00005081576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001057743,"about_ca_system_score_gemma":0.00001287068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000137393,"about_ca_topic_score_gemma":0.0007793997,"domain_scores_codex":[0.998972,0.00007746893,0.0001415451,0.0002773643,0.0002641643,0.0002674542],"domain_scores_gemma":[0.999624,0.00007666832,0.00002239819,0.00008116523,0.00009053991,0.0001052532],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000003820689,0.00002953658,0.008674649,0.000003479245,0.000003833782,0.000001415291,0.0001690261,1.86566e-7,0.9839476,0.001785306,0.000006580288,0.005374535],"study_design_scores_gemma":[0.00009775873,0.0001841109,0.9470358,0.000004630439,0.000003519355,0.00001480041,0.0001427558,0.00002229142,0.01209755,0.002259685,0.03799209,0.0001450387],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969383,0.00006516524,0.00000150065,0.001295216,0.00007362573,0.0001947988,0.00006275069,0.0000256551,0.001342912],"genre_scores_gemma":[0.9967926,0.00007098984,0.00005373893,0.00004460739,0.0004970214,0.00002315475,0.0002554214,0.000001087068,0.002261407],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9718501,"threshold_uncertainty_score":0.4681396,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04491424694396326,"score_gpt":0.2941341432762359,"score_spread":0.2492198963322727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}