{"id":"W2014439672","doi":"10.1101/gr.115956.110","title":"<i>Alu</i> repeat discovery and characterization within human genomes","year":2010,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Genome British Columbia; National Human Genome Research Institute; Howard Hughes Medical Institute","keywords":"Alu element; Retrotransposon; Biology; Genome; Human genome; Genetics; Computational biology; DNA sequencing; Evolutionary biology; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007911345,0.0002081062,0.0003723651,0.0007882332,0.0003366019,0.0005306148,0.000407001,0.0002289199,0.0007064571],"category_scores_gemma":[0.002252606,0.000130624,0.0004469455,0.0007742632,0.000255292,0.0003027825,0.000215137,0.0002413538,0.0001672193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002061025,"about_ca_system_score_gemma":0.0003670321,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0015931,"about_ca_topic_score_gemma":0.002846088,"domain_scores_codex":[0.9996071,0.0001690645,0.00002415621,0.0001094295,0.00006877113,0.00002142384],"domain_scores_gemma":[0.9992206,0.000509502,0.000108232,0.0000842888,0.00005150919,0.00002591132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001701927,0.0003800887,0.2586318,0.0007323001,0.0004126273,0.000731397,0.000400594,0.1640644,0.3657543,0.005518668,0.001086221,0.2005856],"study_design_scores_gemma":[0.0001306136,0.0005408407,0.1785384,0.00005071726,0.0002007018,0.001686179,0.0003217809,0.6588733,0.1486161,0.007221912,0.003754494,0.00006487004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9637897,0.0002286618,0.03410564,0.00006367969,0.000002808131,0.0000436373,0.0008338505,0.000278198,0.0006538121],"genre_scores_gemma":[0.9082161,0.0001478626,0.08873789,0.00003518207,0.000005205931,0.00004840853,0.002581174,0.00004252445,0.0001855457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0015931,"threshold_uncertainty_score":0.004183948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04491424694396326,"score_gpt":0.2941341432762359,"score_spread":0.2492198963322727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}