{"id":"W2014447638","doi":"10.1371/journal.pone.0090046","title":"The Complex Genetic Context of blaPER-1 Flanked by Miniature Inverted-Repeat Transposable Elements in Acinetobacter johnsonii","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Circulatory and Respiratory Health; National Natural Science Foundation of China; University of Sydney","keywords":"Integron; Transposable element; Inverted repeat; Genetics; Biology; Transposition (logic); Gene cassette; Insertion sequence; Plasmid; Context (archaeology); Direct repeat; Gene; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006433151,0.0002450487,0.0002061599,0.00032503,0.0001296716,0.00025842,0.0001497551,0.0002198685,0.0005833913],"category_scores_gemma":[0.0002113537,0.0001638048,0.0002148982,0.000223398,0.0002093383,0.000122053,0.0002145405,0.0003064513,0.0002139659],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000216477,"about_ca_system_score_gemma":0.0001848651,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001416825,"about_ca_topic_score_gemma":0.001523194,"domain_scores_codex":[0.9998717,0.00001618885,0.000009974443,0.00004160023,0.00003038043,0.00003007277],"domain_scores_gemma":[0.9998137,0.00002939797,0.00007521008,0.00002379757,0.00001363455,0.00004430329],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007735346,0.00002770452,0.002224358,0.00002003922,0.000004193137,0.0001656977,0.00004880688,0.00006056928,0.9965563,0.00006595256,0.00000783131,0.0007413708],"study_design_scores_gemma":[0.0000196226,0.000572402,0.2228089,0.00002260522,0.00007398144,0.002240525,0.0004718364,0.002022609,0.7696899,0.0001621181,0.001889209,0.00002643302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992655,0.00009312178,0.0003622934,0.00001167557,0.000002777612,0.000003015796,0.00005176122,0.00001056237,0.0001992799],"genre_scores_gemma":[0.9987413,0.00004465692,0.0005069947,0.000008907431,0.000002351846,0.000002935208,0.0001804195,0.000005553996,0.000506832],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001416825,"threshold_uncertainty_score":0.002817094,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0156191615979232,"score_gpt":0.2121540091402941,"score_spread":0.1965348475423709,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}