{"id":"W2015003861","doi":"10.1139/w05-079","title":"Genetic and antigenic analysis of<i>Bordetella pertussis</i>isolates recovered from clinical cases in Ontario, Canada, before and after the introduction of the acellular pertussis vaccine","year":2005,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Pertactin; Bordetella pertussis; Biology; Pertussis toxin; Serotype; Genetic analysis; Virology; Pulsed-field gel electrophoresis; Microbiology; Pertussis vaccine; Genetic variation; Genetic divergence; Genotype; Genetic diversity; Antigen; Gene; Genetics; Immunization; Medicine; Bacteria; Population; G protein","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001502901,0.0002598151,0.0002643742,0.0008685837,0.001193918,0.0006429664,0.0003083566,0.0003038438,0.0005303217],"category_scores_gemma":[0.001063733,0.0002533254,0.0002250408,0.001512442,0.0007139487,0.0001185008,0.000238109,0.0003900013,0.0001776755],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004541917,"about_ca_system_score_gemma":0.003668155,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8348652,"about_ca_topic_score_gemma":0.8525263,"domain_scores_codex":[0.9994466,0.00002532811,0.00002749723,0.00007544806,0.000223184,0.0002019307],"domain_scores_gemma":[0.9992138,0.00005333267,0.0001723183,0.00002427825,0.0003714356,0.0001647618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009527648,0.0001302419,0.8890792,0.000138139,0.00006953695,0.003013998,0.005715452,0.0002514385,0.09094343,0.0001084546,0.0006995006,0.008897857],"study_design_scores_gemma":[0.000005870661,0.0001069406,0.996668,0.000007352967,0.0000159605,0.0004169704,0.0009649162,0.00004566025,0.0009782629,0.000004751264,0.0007811015,0.000004291988],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987342,0.0001062941,0.00003550966,0.00003837628,0.000003750104,0.0000151278,0.0004368356,0.000001541175,0.0006285591],"genre_scores_gemma":[0.9974922,0.0002270893,0.0001343546,0.00005733678,0.000005785108,0.000009959506,0.00129047,0.000002763499,0.0007800495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1651348,"threshold_uncertainty_score":0.3322147,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007139688908491929,"score_gpt":0.2020015462891642,"score_spread":0.1948618573806723,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}