{"id":"W2015086187","doi":"10.1021/pr100918u","title":"Mapping the Protein Interaction Network in Methicillin-Resistant <i>Staphylococcus aureus</i>","year":2010,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Simon Fraser University; University of British Columbia","funders":"","keywords":"Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Computational biology; Protein Interaction Networks; Interaction network; Antimicrobial; Proteomics; Identification (biology); Protein–protein interaction; Biology; Microbiology; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001425143,0.0001600137,0.0001689376,0.0008670197,0.0002611039,0.0002705039,0.0001426894,0.0001752566,0.0003389074],"category_scores_gemma":[0.0003699062,0.0000987972,0.0001909244,0.0008090081,0.0001183091,0.0002176689,0.0002004447,0.0001838822,0.0001375392],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002877978,"about_ca_system_score_gemma":0.0001744916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001559549,"about_ca_topic_score_gemma":0.00253996,"domain_scores_codex":[0.9998968,0.00002453817,0.000006451044,0.00003409128,0.00002356386,0.00001455455],"domain_scores_gemma":[0.999816,0.00006237063,0.00006717454,0.0000123995,0.00001716331,0.00002488359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002994651,0.00009381036,0.04601419,0.0003514457,0.0001086156,0.0004881921,0.0001567634,0.007361867,0.9271852,0.0008354786,0.0005450587,0.01655992],"study_design_scores_gemma":[0.00001975446,0.0003710484,0.6558204,0.00004025277,0.0001675975,0.001824398,0.0005306684,0.1228126,0.2077431,0.003534781,0.007093313,0.00004206077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952493,0.0005201456,0.003222535,0.00006243673,0.000002248023,0.000008012742,0.0005710797,0.00005302905,0.0003112401],"genre_scores_gemma":[0.9871092,0.0006268391,0.009584081,0.00003767755,0.000004512843,0.00002015426,0.002248045,0.00001068231,0.0003589554],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001559549,"threshold_uncertainty_score":0.003100932,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04466688386535623,"score_gpt":0.3308467176162092,"score_spread":0.286179833750853,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}