{"id":"W2015122569","doi":"10.1039/b315527g","title":"Fungal rhodopsins and opsin-related proteins: eukaryotic homologues of bacteriorhodopsin with unknown functions","year":2004,"lang":"en","type":"article","venue":"Photochemical & Photobiological Sciences","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":93,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Opsin; Transmembrane domain; Transmembrane protein; Rhodopsin; Genome; Evolutionary biology; Genetics; Computational biology; Gene; Retinal; Botany; Receptor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0005117742,0.0003181291,0.0004388363,0.0001401676,0.0004301475,0.0001071623,0.0007190214,0.0002162931,0.0003886499],"category_scores_gemma":[0.0008926426,0.0001956379,0.0001021481,0.001220773,0.005039807,0.0001958977,0.000302935,0.0004347277,0.00003339384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009235601,"about_ca_system_score_gemma":0.0002807779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001131877,"about_ca_topic_score_gemma":0.00001531842,"domain_scores_codex":[0.996989,0.0002093401,0.000457128,0.001026176,0.0005643161,0.0007541089],"domain_scores_gemma":[0.9986702,0.0004763345,0.000158516,0.0002749579,0.00008977922,0.0003302231],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001519829,0.0002892562,0.004983184,0.00001708214,0.000007833406,0.00001770869,0.0001159425,0.00003616226,0.9934447,0.000673725,0.00001044071,0.0002519419],"study_design_scores_gemma":[0.0008016074,0.001741707,0.007342384,0.00007185702,0.00001414019,0.0001931533,0.0000725397,0.00009053911,0.9856058,0.003576914,0.0001766246,0.0003126918],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939938,0.0001405818,0.00008383233,0.0002176433,0.00009130943,0.001074973,0.00006036331,0.0001073663,0.004230182],"genre_scores_gemma":[0.9977115,0.00008503866,0.001706085,0.0001677582,0.00002921116,0.0001633018,0.000008219624,0.00001338005,0.0001154926],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007838899,"threshold_uncertainty_score":0.9976679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04916345739699428,"score_gpt":0.2934051756357817,"score_spread":0.2442417182387874,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}