{"id":"W2015181181","doi":"10.1021/pr900788a","title":"Activity-Based Proteome Profiling of Hepatoma Cells during Hepatitis C Virus Replication Using Protease Substrate Probes","year":2009,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Hepatitis C virus research","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Steacie Institute for Molecular Sciences; University of Ottawa","funders":"Canadian Institutes of Health Research; Canadian Liver Foundation","keywords":"Biochemistry; Protease; Biology; Proteome; Hepatitis C virus; Molecular biology; Enzyme; Chemistry; Virus; Virology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.007020272,0.0003084093,0.0008805483,0.001895091,0.0003297647,0.0001240652,0.0005269244,0.000276272,0.0001026368],"category_scores_gemma":[0.00213105,0.0002653766,0.0003140872,0.001894637,0.0003253923,0.0006512871,0.0001016343,0.002232167,0.00002324315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009306521,"about_ca_system_score_gemma":0.003023601,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006749638,"about_ca_topic_score_gemma":0.00002400763,"domain_scores_codex":[0.9924552,0.001055073,0.001328644,0.0005837436,0.003526106,0.001051169],"domain_scores_gemma":[0.993621,0.0001668389,0.000872642,0.001040586,0.003656711,0.000642247],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002606516,0.001016313,0.03808608,0.001522201,0.00007508144,0.0006222482,0.0001346965,0.0001157964,0.9513224,0.00001522606,0.00001740149,0.00446598],"study_design_scores_gemma":[0.002189756,0.003138662,0.0491791,0.001533346,0.00003475916,0.0001625073,0.00002453059,0.00603872,0.9372072,0.0002334868,0.00005486952,0.00020312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903594,0.0001653398,0.001267282,0.001071464,0.0000409467,0.006802449,0.00002576873,0.00003824148,0.0002291551],"genre_scores_gemma":[0.9725799,0.000194271,0.02645985,0.00001761393,0.0003444855,0.0001990494,0.000004025181,0.00006586984,0.0001349297],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02519257,"threshold_uncertainty_score":0.9999799,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1216002455539903,"score_gpt":0.4255431243797151,"score_spread":0.3039428788257248,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}