{"id":"W2015213608","doi":"10.1038/ng1470","title":"Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid","year":2004,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":398,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Salmonella typhi; Genome; Serotype; Pseudogene; Salmonella enterica; Typhoid fever; Genetics; Gene; Microbiology; Salmonella; Virology; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001900748,0.0001993328,0.00034732,0.000534624,0.0002685013,0.0004223422,0.0001612237,0.0004664475,0.001612901],"category_scores_gemma":[0.0006731924,0.000161551,0.0004401535,0.0003083766,0.0002124672,0.0002558866,0.0002207671,0.0004935589,0.0004038136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002866682,"about_ca_system_score_gemma":0.0001919914,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002055179,"about_ca_topic_score_gemma":0.001757327,"domain_scores_codex":[0.9998046,0.00002814645,0.00001218412,0.00004950797,0.00004381013,0.00006177806],"domain_scores_gemma":[0.9993336,0.0001557663,0.0001485964,0.00005915188,0.0001640236,0.0001388697],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001411577,0.00003962158,0.007965228,0.00004524038,0.00002835047,0.0000598643,0.00008515722,0.0001021789,0.9883426,0.00007809742,0.0000874603,0.001754594],"study_design_scores_gemma":[0.00003469245,0.001356772,0.6450376,0.00001309828,0.00009685163,0.001155573,0.0004758343,0.002070378,0.3465545,0.0001769017,0.003007457,0.00002041737],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973018,0.0005213786,0.0005200505,0.00004021056,0.00001030512,0.00000368923,0.0009329355,0.00001322296,0.0006562998],"genre_scores_gemma":[0.9945285,0.0001889026,0.0004472502,0.00006764085,0.00000594788,0.000007840787,0.003400818,0.00001966472,0.001333358],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002055179,"threshold_uncertainty_score":0.00539571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05338904621001368,"score_gpt":0.3164749920487064,"score_spread":0.2630859458386927,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}