{"id":"W2015362120","doi":"10.4161/epi.5.1.10631","title":"Variable DNA methylation of transposable elements: The case study of mouse Early Transposons","year":2010,"lang":"en","type":"article","venue":"Epigenetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"Natural Environment Research Council; Canadian Institutes of Health Research; Sight Research UK","keywords":"Biology; Epigenetics; DNA methylation; Transposable element; Genetics; Methylation; CpG site; Phenotype; Gene silencing; Genome; DNA; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002210438,0.00008699411,0.0001325992,0.00000861164,0.0001540587,0.00001270497,0.000191976,0.00006121885,0.0003947455],"category_scores_gemma":[0.00001628609,0.00003262504,0.00005210692,0.0003034047,0.00004688435,0.00003103419,0.0000147518,0.00009987842,0.000002358231],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002780443,"about_ca_system_score_gemma":0.00001059186,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001237221,"about_ca_topic_score_gemma":0.01261868,"domain_scores_codex":[0.9991734,0.00006252735,0.0003325271,0.0001421816,0.0001527567,0.0001366174],"domain_scores_gemma":[0.9994898,0.0001409103,0.0001126731,0.0001098059,0.0001033284,0.0000434747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001064907,0.0006468463,0.04800704,0.000005436152,0.00003942753,0.00000507665,0.001773202,0.0001588556,0.9429999,0.000539304,0.000006061263,0.005808218],"study_design_scores_gemma":[0.001665619,0.004458727,0.3695304,0.00001592065,0.0004820405,0.00005832794,0.01064369,0.001345545,0.6014524,0.004045512,0.005766346,0.0005354873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990218,0.0000284146,0.00003047649,0.0001453818,0.00009421399,0.0003736827,0.0001184077,0.00001138996,0.0001761867],"genre_scores_gemma":[0.9986691,0.000008629972,0.001075204,0.00001122028,0.00005995931,0.00001489385,0.00001353103,0.000001100866,0.0001464007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3415475,"threshold_uncertainty_score":0.7041519,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01839601401504347,"score_gpt":0.2327747732634711,"score_spread":0.2143787592484276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}