{"id":"W2015364707","doi":"10.1101/gr.171439.113","title":"The effect of genotype and in utero environment on interindividual variation in neonate DNA methylomes","year":2014,"lang":"en","type":"article","venue":"Genome Research","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":362,"is_retracted":false,"has_abstract":true,"ca_institutions":"Child and Family Research Institute; McGill University; Douglas Mental Health University Institute; University of British Columbia","funders":"National Research Foundation; National Medical Research Council; National Research Foundation Singapore; National Institute for Health and Care Research; Agency for Science, Technology and Research; Medical Research Council; Canadian Institute for Advanced Research","keywords":"DNA methylation; Biology; Epigenetics; Genetics; Genotype; In utero; Methylation; Genetic variation; DNA; Fetus; Gene; Pregnancy; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008188562,0.000184705,0.000384846,0.0005559463,0.0002474333,0.0003839541,0.000222794,0.0002554332,0.001359344],"category_scores_gemma":[0.00220248,0.0001739998,0.0002490173,0.0004970886,0.0003601666,0.0001653558,0.0005087265,0.0002298733,0.000185159],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001886567,"about_ca_system_score_gemma":0.0001524982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001522734,"about_ca_topic_score_gemma":0.003734646,"domain_scores_codex":[0.9992053,0.00028806,0.00004865846,0.0002703659,0.0001282738,0.00005931974],"domain_scores_gemma":[0.9985127,0.0006604503,0.0003732142,0.0002627378,0.0001038091,0.00008720267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000459683,0.00001865194,0.7104528,0.00006205999,0.0004477183,0.0003197493,0.0005373421,0.0004070259,0.2672613,0.0002928441,0.0000846141,0.01965624],"study_design_scores_gemma":[0.000001370487,0.00006324776,0.9877906,0.000003939257,0.0000447149,0.0002963579,0.00008348148,0.0003235435,0.01092545,0.0001466257,0.0003135756,0.000007142249],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960907,0.0004661629,0.002439143,0.00002172147,0.00000384679,0.000004602341,0.0004366382,0.00001025743,0.0005269625],"genre_scores_gemma":[0.9981524,0.0001590178,0.00117309,0.00001804602,0.000001832166,0.000009712265,0.0002297138,0.00001589566,0.000240394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001522734,"threshold_uncertainty_score":0.004547477,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01671615804003995,"score_gpt":0.3084512473536649,"score_spread":0.291735089313625,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}