{"id":"W2015411335","doi":"10.1021/es4020184","title":"Metagenomics of Hydrocarbon Resource Environments Indicates Aerobic Taxa and Genes to be Unexpectedly Common","year":2013,"lang":"en","type":"article","venue":"Environmental Science & Technology","topic":"Atmospheric and Environmental Gas Dynamics","field":"Environmental Science","cited_by":206,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre; University of Calgary; Alberta Innovates; Genome British Columbia; University of Alberta","funders":"Genome Alberta; Canada Research Chairs; Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; Syncrude; Government of Alberta; Genome Canada; Canadian Institute for Advanced Research; Suncor Energy Incorporated; ConocoPhillips","keywords":"Archaea; Metagenomics; Hydrocarbon; Methane; Microbial population biology; Bacteria; Biology; Anaerobic exercise; Energy source; Oil sands; Microbial metabolism; Anaerobic bacteria; Coal; Methanogenesis; Ecology; Environmental science; Environmental chemistry; Gene; Fossil fuel; Chemistry; Paleontology; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002864278,0.0003934818,0.0004045605,0.0001486475,0.0003842208,0.00003691752,0.001156468,0.0002216769,0.001017618],"category_scores_gemma":[0.00001952526,0.000377556,0.00006227004,0.0009284326,0.005779142,0.000447516,0.002355038,0.0002660028,0.0004400091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006923137,"about_ca_system_score_gemma":0.000008228473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000315256,"about_ca_topic_score_gemma":0.00001588673,"domain_scores_codex":[0.9969451,0.00004168627,0.0004972709,0.001003066,0.0006965994,0.0008163008],"domain_scores_gemma":[0.9986134,0.00003192958,0.0002644644,0.0007195231,8.618758e-7,0.000369852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000009681553,0.0001936613,0.1673667,0.000002382587,0.00001466747,0.000004560691,0.0003396907,0.005695042,0.7958512,0.00006818562,0.00006954432,0.03038468],"study_design_scores_gemma":[0.001005898,0.001207867,0.6010969,0.00002084925,0.00009692305,0.0001283617,0.005203128,0.005479073,0.3403265,0.001457911,0.04249715,0.001479481],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962537,0.0002342528,0.0006199597,0.0007605522,0.00004506736,0.0006811725,0.000005872081,0.00006838798,0.001331055],"genre_scores_gemma":[0.9862263,0.0002394268,0.0122533,0.0005299314,0.000009605558,0.0001039465,0.000006423119,0.00004067818,0.0005903944],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4555247,"threshold_uncertainty_score":0.9998956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004237020216822579,"score_gpt":0.183639246378631,"score_spread":0.1794022261618085,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}