{"id":"W2015468210","doi":"10.4137/ebo.s5861","title":"EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics","year":2010,"lang":"en","type":"article","venue":"Evolutionary Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Genomics; Identification (biology); Computer science; Data science; Pipeline (software); DNA sequencing; Computational biology; Software; Gene prediction; Biology; Genome; Gene; Genetics; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003678023,0.004308997,0.002349869,0.004045018,0.001143633,0.003471812,0.006453212,0.001704054,0.04920311],"category_scores_gemma":[0.004578113,0.00272566,0.002200248,0.002929399,0.0009511246,0.004828409,0.006220487,0.005535317,0.03966295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008536523,"about_ca_system_score_gemma":0.001531503,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00146224,"about_ca_topic_score_gemma":0.001356992,"domain_scores_codex":[0.9988583,0.0002253436,0.0001182826,0.0002940246,0.0003473633,0.0001567604],"domain_scores_gemma":[0.9983838,0.0007873067,0.0001825267,0.0002306143,0.0001645855,0.0002511998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001823048,0.0003379995,0.002414699,0.003826432,0.0006795712,0.0008981267,0.0006532182,0.007188094,0.01966767,0.01872371,0.7633608,0.1804267],"study_design_scores_gemma":[0.001059264,0.000214584,0.004131765,0.001149627,0.0002016754,0.001290798,0.0002081586,0.03872841,0.02620148,0.07609442,0.8502564,0.0004632444],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002764367,0.001530968,0.3427152,0.0008093586,0.0006415885,0.0004241935,0.09997208,0.5420122,0.009130041],"genre_scores_gemma":[0.01962687,0.002897401,0.4742509,0.002191868,0.0003490071,0.002786642,0.2944711,0.1898891,0.01353726],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04920311,"threshold_uncertainty_score":0.1646008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01143808747846476,"score_gpt":0.225148617095894,"score_spread":0.2137105296174292,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}