{"id":"W2015564876","doi":"10.1186/s12864-015-1435-2","title":"Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Research Organization of Information and Systems","keywords":"Biology; Lactic acid; Whole genome sequencing; Silage; Bacteria; Genome; Genetics; Microbiology; Lactobacillus; Lactobacillaceae; Computational biology; Food science; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001833021,0.0008538858,0.0005229065,0.0009466264,0.0004803801,0.0006023963,0.0004002259,0.0005090146,0.0009432408],"category_scores_gemma":[0.0003174607,0.0002277777,0.0006796579,0.001538647,0.0002591145,0.0002795391,0.0003306006,0.0005660148,0.001283943],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004261179,"about_ca_system_score_gemma":0.0009076716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005818037,"about_ca_topic_score_gemma":0.003833995,"domain_scores_codex":[0.9998378,0.00001283119,0.00001688736,0.00005347745,0.00005100319,0.00002799239],"domain_scores_gemma":[0.9996773,0.00003663898,0.0001013469,0.00002698689,0.00008088008,0.0000769093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005347067,0.0001031279,0.003245715,0.0004095597,0.00002976016,0.0004601188,0.0002009065,0.0004554607,0.9847355,0.00008365393,0.000539062,0.009202315],"study_design_scores_gemma":[0.0002805207,0.001455712,0.4802015,0.0003466503,0.0008122383,0.004196232,0.001346954,0.006868395,0.403166,0.0004177304,0.1006813,0.0002266898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9051304,0.004356028,0.01170382,0.0003023697,0.00009079953,0.0003744626,0.0743187,0.0003458998,0.003377515],"genre_scores_gemma":[0.6317847,0.003461353,0.03010052,0.0002365906,0.00006536131,0.0004214346,0.3278363,0.0003496419,0.005744003],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005818037,"threshold_uncertainty_score":0.01156837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0687277886463591,"score_gpt":0.2367770975538024,"score_spread":0.1680493089074434,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}