{"id":"W2015564876","doi":"10.1186/s12864-015-1435-2","title":"Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Research Organization of Information and Systems","keywords":"Biology; Lactic acid; Whole genome sequencing; Silage; Bacteria; Genome; Genetics; Microbiology; Lactobacillus; Lactobacillaceae; Computational biology; Food science; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001617178,0.0001830205,0.0004113324,0.00004432864,0.0000765685,0.00006385687,0.0002418341,0.0001258436,0.00009020743],"category_scores_gemma":[0.00002606444,0.00008881327,0.0001336851,0.0005850605,0.0001096226,0.00007822812,0.000137228,0.0001062662,0.00001950733],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000672778,"about_ca_system_score_gemma":0.00002362697,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005729198,"about_ca_topic_score_gemma":0.001134997,"domain_scores_codex":[0.9988235,0.00007807947,0.0003237276,0.0003673392,0.0001416558,0.0002657613],"domain_scores_gemma":[0.9992857,0.00006487573,0.000199341,0.0001421706,0.0001079832,0.000199921],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001297423,0.0000533916,0.009345506,0.000005456533,0.0002381713,0.000003554707,0.0001871003,0.00005018178,0.9890096,0.00002536996,0.00001054926,0.0009413889],"study_design_scores_gemma":[0.001357284,0.001504759,0.9466752,0.00002752695,0.001901077,0.00001982281,0.001050382,0.02868433,0.005902462,0.0009434337,0.01077733,0.001156387],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968748,0.0007867359,0.0001399821,0.0001808366,0.0001232282,0.0001451911,0.001613606,0.00003073017,0.0001049097],"genre_scores_gemma":[0.9980723,0.000125797,0.0009137723,0.0001366459,0.00008207696,0.000003138756,0.0006313425,0.000002133405,0.00003283719],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9831071,"threshold_uncertainty_score":0.36217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0687277886463591,"score_gpt":0.2367770975538024,"score_spread":0.1680493089074434,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}