{"id":"W2015834769","doi":"10.1186/1471-2164-15-996","title":"Genome sequencing of Sporisorium scitamineum provides insights into the pathogenic mechanisms of sugarcane smut","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Sugarcane Cultivation and Processing","field":"Agricultural and Biological Sciences","cited_by":155,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Program for New Century Excellent Talents in University; Department of Education, Fujian Province; National Natural Science Foundation of China","keywords":"Biology; Genome; Gene; Locus (genetics); Genetics; Fungus; Whole genome sequencing; Genome size; Gene family; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004089123,0.0001230801,0.0001991516,0.00001920403,0.0001594377,0.0000250314,0.0003461748,0.00007151443,0.00004711879],"category_scores_gemma":[0.0001361626,0.00004443381,0.00008678604,0.0002734896,0.00009581611,0.00006977315,0.00008064732,0.00007884541,0.000005184989],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004667808,"about_ca_system_score_gemma":0.00005506186,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002907329,"about_ca_topic_score_gemma":0.0009033954,"domain_scores_codex":[0.9990024,0.00009274379,0.0003460241,0.0002119609,0.0001779077,0.0001689445],"domain_scores_gemma":[0.9992021,0.000224669,0.0002750012,0.00009899641,0.0001467619,0.00005248905],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001426833,0.00001398842,0.001286033,0.00003418176,0.000005427657,1.644925e-7,0.001230986,0.00008533681,0.9895989,0.001661423,0.000001741278,0.00606752],"study_design_scores_gemma":[0.0003588257,0.0004839057,0.1143054,0.00005858141,0.00004743859,0.000008115533,0.007464276,0.002297125,0.8351397,0.03214754,0.007237721,0.0004513748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983063,0.0002450958,0.0006716683,0.000145287,0.00009974863,0.0001790272,0.000005295786,0.00002103898,0.0003264745],"genre_scores_gemma":[0.9979604,0.00002830992,0.001642484,0.0001056376,0.000147473,0.000007775027,0.00002638476,0.000001946592,0.00007956008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1544592,"threshold_uncertainty_score":0.1811958,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0290927357294716,"score_gpt":0.2118432630685923,"score_spread":0.1827505273391207,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}