{"id":"W2015962424","doi":"10.1093/molbev/msu110","title":"Evidence for Selection on Gene Expression in Cultivated Rice (Oryza sativa)","year":2014,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Expression quantitative trait loci; Biology; Oryza sativa; Genetics; Gene; Quantitative trait locus; Allele; Domestication; Selection (genetic algorithm); Genotype; Single-nucleotide polymorphism","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002330636,0.0001042828,0.00009878387,0.00005833092,0.0001084031,0.000008015132,0.00006256811,0.0001871575,0.00000252788],"category_scores_gemma":[0.000245408,0.00009426757,0.00003587529,0.00005771524,0.00004449189,0.000002989354,0.0000366768,0.00005523011,0.000002929252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001211031,"about_ca_system_score_gemma":0.00001668248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002347481,"about_ca_topic_score_gemma":0.000008522094,"domain_scores_codex":[0.9992387,0.000120989,0.000107287,0.0003205721,0.00003872642,0.0001737374],"domain_scores_gemma":[0.9997438,0.00003091633,0.00004782039,0.00009597706,0.00004244223,0.00003903987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002245361,0.00002865748,0.0215223,0.00001323888,0.000008098059,2.485073e-7,0.00001344161,0.0001522226,0.9764687,0.000639301,0.0002849557,0.0006442909],"study_design_scores_gemma":[0.001041123,0.001224806,0.09897481,0.00009155743,0.00001568913,0.000009595825,0.00003017437,0.001130992,0.8924037,0.001889842,0.002942105,0.0002456532],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.871311,0.0004911599,0.1276646,0.0001227247,0.00006782447,0.0001450033,0.000007843433,0.000009714477,0.000180151],"genre_scores_gemma":[0.9971955,0.0001021777,0.002241417,0.0001950666,0.00007159902,0.00001833518,0.0000815825,0.000005271534,0.00008905886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1258845,"threshold_uncertainty_score":0.384412,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01990180630348153,"score_gpt":0.2775240876068698,"score_spread":0.2576222813033883,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}