{"id":"W2015978621","doi":"10.1089/aid.2007.0282","title":"Near Full-Length Genomic Analysis of a Novel Subtype A1/C Recombinant HIV Type 1 Isolate from Canada","year":2008,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University; Jewish General Hospital","funders":"","keywords":"Recombinant DNA; Breakpoint; Virology; Biology; Genome; Genetics; Reverse transcriptase; Lentivirus; Human immunodeficiency virus (HIV); Recombinant virus; Gene; Viral disease; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003880342,0.0001927294,0.0005434859,0.00047685,0.0008435094,0.00003315262,0.0003431358,0.0001470542,0.001688565],"category_scores_gemma":[0.0001745006,0.0001587155,0.00009765763,0.0007950546,0.0008646364,0.00007749535,0.0002261947,0.0005182981,0.0002134782],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001915304,"about_ca_system_score_gemma":0.0009500377,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6099664,"about_ca_topic_score_gemma":0.3538052,"domain_scores_codex":[0.9978916,0.000266653,0.0003458174,0.0004713445,0.0002110362,0.0008135148],"domain_scores_gemma":[0.9985011,0.0004280532,0.00008458298,0.0005136153,0.000324887,0.0001478122],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001030354,0.0006100107,0.7842303,0.00001962129,0.004574949,0.0001151038,0.000537874,0.000006887285,0.1950871,0.0004994427,0.01270036,0.0005880041],"study_design_scores_gemma":[0.002455742,0.003134803,0.9661001,0.00002266091,0.0002307261,0.00001681759,0.0002367138,0.00001117857,0.0056734,0.00008071963,0.02178885,0.0002482886],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954534,0.00294182,0.000006376621,0.00006536867,0.00008362578,0.0002119323,0.0006469504,0.00001948954,0.0005710347],"genre_scores_gemma":[0.9943961,0.0008497373,0.0001123215,0.00002714064,0.00002057752,0.00001518552,0.0005922124,0.00002007939,0.003966647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2561612,"threshold_uncertainty_score":0.999224,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0697429590716262,"score_gpt":0.3152710679678388,"score_spread":0.2455281088962126,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}