{"id":"W2016358361","doi":"10.1186/1471-2148-11-349","title":"Molecular phylodynamics and protein modeling of infectious salmon anemia virus (ISAV)","year":2011,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Departamento de Investigaciones Científicas y Tecnológicas, Universidad de Santiago de Chile; National Institute of General Medical Sciences; Comisión Nacional de Investigación Científica y Tecnológica; National Institutes of Health; Universidad de Santiago de Chile; Brigham Young University","keywords":"Biology; Viral phylodynamics; Phylogenetic tree; Most recent common ancestor; Population; Demographic history; Clade; Monophyly; Evolutionary biology; Genetics; Gene; Genetic variation; Demography","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004002908,0.0004604409,0.0002865654,0.0006529285,0.0007227957,0.0007364369,0.0005986425,0.0005929489,0.001677535],"category_scores_gemma":[0.00117505,0.0002378588,0.0004425934,0.0004073657,0.0004862579,0.0006377313,0.0003346408,0.00049865,0.0003477656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001520259,"about_ca_system_score_gemma":0.0009465219,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01155087,"about_ca_topic_score_gemma":0.007143807,"domain_scores_codex":[0.9998989,0.00002833827,0.000004522705,0.0000264725,0.0000192735,0.00002242736],"domain_scores_gemma":[0.9997354,0.00008242292,0.00007476012,0.00001520105,0.00004698085,0.00004523567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003056392,0.0001559305,0.06564333,0.000142163,0.0001003901,0.000350265,0.0003916885,0.8721744,0.03605753,0.01041284,0.001241842,0.01302407],"study_design_scores_gemma":[0.00001194017,0.00003464706,0.005510581,0.000007041905,0.000009430751,0.00004507362,0.0000589643,0.9911497,0.001127579,0.001446403,0.0005923418,0.000006441907],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9578954,0.0003045741,0.0364517,0.0003637515,0.00001891027,0.00004472061,0.0004500206,0.000219369,0.004251496],"genre_scores_gemma":[0.9862644,0.0002030406,0.01197662,0.00004070171,0.00001133981,0.00005335949,0.0005670835,0.00007334181,0.0008101222],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01155087,"threshold_uncertainty_score":0.02296728,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01396865216538702,"score_gpt":0.2153229276448221,"score_spread":0.201354275479435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}