{"id":"W2016523535","doi":"10.1111/tpj.12565","title":"Profiling of extensively diversified plant <scp>LINE</scp>s reveals distinct plant‐specific subclades","year":2014,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung; Institute of Genetics; Technische Universität Dresden; Bundesministerium für Bildung und Forschung","keywords":"Subclade; Genome; Retrotransposon; Biology; Computational biology; Annotation; Genetics; Clade; Evolutionary biology; Phylogenetics; Gene; Transposable element","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001604463,0.0002987917,0.0003117239,0.001115059,0.0002526151,0.0005507914,0.0001608725,0.0003353733,0.001003867],"category_scores_gemma":[0.0005136807,0.0001754681,0.0003432547,0.001221219,0.0001452797,0.0002638507,0.0003024063,0.0004616008,0.0009402474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001583655,"about_ca_system_score_gemma":0.0001356631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007732866,"about_ca_topic_score_gemma":0.001362415,"domain_scores_codex":[0.9997877,0.00001566845,0.00001388034,0.00009824192,0.00004980994,0.0000346959],"domain_scores_gemma":[0.9995258,0.0001260801,0.0001560386,0.00005029229,0.00006106972,0.00008059126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001764326,0.00001914072,0.01493042,0.0001455561,0.00003036937,0.0001089024,0.0001847048,0.0001258252,0.9729162,0.00005289839,0.000095048,0.01121454],"study_design_scores_gemma":[0.00001512443,0.0003976744,0.7474692,0.0000632291,0.0001879119,0.002366831,0.000490593,0.002553405,0.232388,0.0002469043,0.0137698,0.0000512773],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9802161,0.001559645,0.007050928,0.00004936814,0.000006002094,0.00003722922,0.009528703,0.0003745916,0.001177475],"genre_scores_gemma":[0.9424055,0.001345214,0.01675955,0.0001374795,0.00001455545,0.00007538717,0.03705284,0.0003016341,0.001907663],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001115059,"threshold_uncertainty_score":0.003358245,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04434087244010094,"score_gpt":0.2072529077948675,"score_spread":0.1629120353547666,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}