{"id":"W2016552683","doi":"10.1186/1471-2180-14-70","title":"The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Apotex (Canada); University of Manitoba; Public Health Agency of Canada","funders":"Government of Canada","keywords":"Prophage; Biology; Virulence; Campylobacter jejuni; Proteome; Microbiology; Proteomics; Campylobacter; Gene expression; Gene; Bacteria; Genetics; Escherichia coli; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002706437,0.0005857666,0.0004004944,0.0004039809,0.0002614327,0.0004804889,0.0003415766,0.0003769308,0.0009923432],"category_scores_gemma":[0.0003646367,0.0001881701,0.0003151114,0.0004932511,0.000299648,0.0002422067,0.0004027698,0.0005431297,0.0003652241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005073787,"about_ca_system_score_gemma":0.000290297,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001631268,"about_ca_topic_score_gemma":0.001439019,"domain_scores_codex":[0.9996399,0.00004393143,0.00003198391,0.000078038,0.0001158247,0.00009038152],"domain_scores_gemma":[0.9997519,0.00006422276,0.00007042388,0.00001866381,0.00004515336,0.00004960981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001579669,0.00002773258,0.0002064777,0.00005878388,0.000004192635,0.00003114634,0.00001947613,0.00001635659,0.999028,0.00001150896,0.00004532907,0.0003930767],"study_design_scores_gemma":[0.0000134311,0.0003505641,0.02247444,0.00002882085,0.00002676811,0.0002488225,0.00008663369,0.0005577368,0.9733267,0.00002170307,0.002848837,0.00001555062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936054,0.001284228,0.001107855,0.000164523,0.00007382607,0.00004197422,0.002451711,0.00007773976,0.001192723],"genre_scores_gemma":[0.9718969,0.001565443,0.008682908,0.0002096246,0.00003230655,0.0001589709,0.01248857,0.0001412145,0.004823882],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001631268,"threshold_uncertainty_score":0.003681362,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01012720089352269,"score_gpt":0.1957445747334015,"score_spread":0.1856173738398788,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}