{"id":"W2016736937","doi":"10.1099/ijs.0.055079-0","title":"Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils","year":2013,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"GNS Science","keywords":"Biology; Thermophile; Acidobacteria; Biochemistry; Yeast extract; Xylose; Proteobacteria; Botany; Microbiology; 16S ribosomal RNA; Fermentation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002401265,0.0001877863,0.0004028797,0.00006442617,0.00006274263,0.00002044701,0.0005338123,0.0001383762,0.00008700445],"category_scores_gemma":[0.00006384245,0.0001217418,0.0002231663,0.00004137672,0.000232094,0.000006798106,0.000268267,0.00008429708,0.000007298267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002419966,"about_ca_system_score_gemma":0.00006616861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001446945,"about_ca_topic_score_gemma":0.00001783944,"domain_scores_codex":[0.9986137,0.0001378613,0.0007594235,0.0001978731,0.0001244958,0.0001666922],"domain_scores_gemma":[0.9984679,0.0000687446,0.0007253069,0.000219935,0.0004697402,0.0000483253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005679278,0.00007076158,0.007865723,0.0001728543,0.0009505018,0.000001249039,0.0001351362,0.00004732778,0.9901835,0.000104058,0.0003473779,0.00006475871],"study_design_scores_gemma":[0.006057252,0.0008681315,0.7127289,0.002828872,0.000710392,0.005168631,0.002093357,0.0004311044,0.2600504,0.003050499,0.004855068,0.00115741],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898667,0.007759073,0.0004413831,0.0003625484,0.00102634,0.0002851719,0.0001672482,0.00000129426,0.00009021554],"genre_scores_gemma":[0.9978639,0.0003231114,0.0010261,0.000193793,0.0004463987,0.00001884138,0.00002443973,0.00001524088,0.00008814635],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.730133,"threshold_uncertainty_score":0.4964486,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01349362489685225,"score_gpt":0.2218003711929051,"score_spread":0.2083067462960529,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}