{"id":"W2017265445","doi":"10.1128/jcm.00242-14","title":"Sequence-Level and Dual-Phase Identification of Salmonella Flagellum Antigens by Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS)","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Flagellum; Serotype; Salmonella; Salmonella enterica; Typing; Antiserum; Mass spectrometry; Chromatography; Tandem mass spectrometry; Antigen; Biology; Microbiology; Chemistry; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060228,0.0004984539,0.0002702696,0.0009869805,0.0002971681,0.0003558669,0.000259637,0.0005868085,0.0005039827],"category_scores_gemma":[0.001166423,0.0001816635,0.0001863828,0.0005017976,0.0003165296,0.0002699899,0.0003437996,0.0002173794,0.000330809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002155958,"about_ca_system_score_gemma":0.0003131343,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008945432,"about_ca_topic_score_gemma":0.001203216,"domain_scores_codex":[0.9993823,0.00007037353,0.00005420731,0.0001527886,0.0002712289,0.00006909418],"domain_scores_gemma":[0.9994811,0.00008304817,0.0001199882,0.00004110367,0.000222407,0.00005228809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000380575,0.00006474277,0.008738342,0.00004269005,0.00001786894,0.00005252147,0.00004698365,0.00008948914,0.9837567,0.00002856698,0.00004084643,0.006740725],"study_design_scores_gemma":[0.00004361898,0.001606053,0.08301079,0.00001634057,0.00009224456,0.001164223,0.000118303,0.002000992,0.9098715,0.0001161304,0.001928264,0.00003159439],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939432,0.0006265462,0.004161695,0.00003843439,0.00001504923,0.00003662794,0.0007540974,0.00007429218,0.0003501757],"genre_scores_gemma":[0.9843618,0.0003271094,0.01307497,0.00009062156,0.00001540542,0.00005507243,0.001406193,0.00001685673,0.0006519397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009869805,"threshold_uncertainty_score":0.003185153,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06372701146597338,"score_gpt":0.3387025114655105,"score_spread":0.2749754999995371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}