{"id":"W2017376644","doi":"10.1371/journal.pone.0112928","title":"Marked Microevolution of a Unique Mycobacterium tuberculosis Strain in 17 Years of Ongoing Transmission in a High Risk Population","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Public Health; Saskatchewan Disease Control Laboratory; Public Health Ontario; University of Toronto","funders":"","keywords":"Tuberculosis; Mycobacterium tuberculosis; Microevolution; Genotyping; Transmission (telecommunications); Biology; Molecular epidemiology; Population; Whole genome sequencing; Outbreak; Genetics; Strain (injury); Single-nucleotide polymorphism; Virology; Genotype; Medicine; Genome; Environmental health; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004620047,0.0002024745,0.0002113619,0.0006113957,0.0003822418,0.000382843,0.0001896438,0.0003224104,0.0004016573],"category_scores_gemma":[0.0007268573,0.0001802917,0.0002362662,0.0005354788,0.0003953959,0.000244054,0.0004279003,0.0003113939,0.00008719348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002065091,"about_ca_system_score_gemma":0.000129458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00180247,"about_ca_topic_score_gemma":0.002538998,"domain_scores_codex":[0.9997526,0.00007116693,0.00001341389,0.00007802358,0.00003382723,0.00005086736],"domain_scores_gemma":[0.9996531,0.00006866655,0.0001390848,0.00004041221,0.00003452281,0.00006417553],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002614569,0.00004268634,0.9564705,0.00001479358,0.00006827206,0.0006217876,0.000843255,0.0002035407,0.03509603,0.00004708017,0.00003510265,0.006295447],"study_design_scores_gemma":[0.000001193103,0.00008555277,0.9977992,0.000002514106,0.00001937407,0.000622201,0.0004295991,0.0002057711,0.0007066024,0.00002561118,0.00009924797,0.000003101131],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998109,0.00002913452,0.00007330169,0.000003766375,5.171494e-7,0.000001421469,0.00001898273,8.314277e-7,0.00006125999],"genre_scores_gemma":[0.999688,0.00004827936,0.0001373068,0.000008223391,0.00000194846,0.000002341502,0.00007203296,0.00000128537,0.00004053103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00180247,"threshold_uncertainty_score":0.003583908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02224025319503418,"score_gpt":0.2646622621573388,"score_spread":0.2424220089623047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}