{"id":"W2017476662","doi":"10.1099/vir.0.042895-0","title":"Low-pathogenic avian influenza virus A/turkey/Ontario/6213/1966 (H5N1) is the progenitor of highly pathogenic A/turkey/Ontario/7732/1966 (H5N9)","year":2012,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Canadian Science Centre for Human and Animal Health; Canadian Institutes of Health Research; University of Ottawa","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; University of Ottawa; U.S. Department of Health and Human Services","keywords":"Biology; Reassortment; Influenza A virus subtype H5N1; Virology; Waterfowl; Virus; Neuraminidase; Phylogenetic tree; Lineage (genetic); Outbreak; Genome; Phylogenetics; Influenza A virus; H5N1 genetic structure; Gene; Genetics; Infectious disease (medical specialty); Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002429235,0.0008140035,0.001928029,0.0006924927,0.0004678674,0.00005687345,0.001053915,0.000683582,0.001619568],"category_scores_gemma":[0.000527212,0.0005386292,0.001287767,0.0005708624,0.0008759081,0.0005658515,0.0005350831,0.002575468,0.000211653],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001325638,"about_ca_system_score_gemma":0.002001313,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02285703,"about_ca_topic_score_gemma":0.01783921,"domain_scores_codex":[0.9926308,0.000728466,0.002439592,0.0005628626,0.001726495,0.001911797],"domain_scores_gemma":[0.994814,0.0003391461,0.001615979,0.001169866,0.001170085,0.0008908821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005178544,0.001297552,0.2148362,0.0001680634,0.002742303,0.0004192585,0.0106776,0.0001146475,0.7493806,0.0002203246,0.01243481,0.002530077],"study_design_scores_gemma":[0.008110793,0.004766037,0.5789729,0.0001782609,0.001774846,0.002982656,0.0002829052,0.00005815911,0.09267111,0.0002834382,0.3090963,0.0008224832],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845718,0.00996321,0.00003174062,0.001518626,0.001653492,0.001022604,0.00008600231,0.00003583917,0.00111669],"genre_scores_gemma":[0.9802142,0.0006394894,0.002566534,0.007979603,0.003867676,0.00008419885,0.00001521844,0.0001436023,0.004489458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6567095,"threshold_uncertainty_score":0.9997256,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04930277993866764,"score_gpt":0.3323112726756448,"score_spread":0.2830084927369771,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}