{"id":"W2017648466","doi":"10.3791/1387","title":"Large Insert Environmental Genomic Library Production","year":2009,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft; Tula Foundation","keywords":"Fosmid; Biology; Insert (composites); genomic DNA; Genomic library; Metagenomics; Nanopore sequencing; DNA; Genetics; DNA sequencing; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009927333,0.0001258566,0.0001688871,0.00005601707,0.0001064874,0.00004589964,0.0001815411,0.00004794856,0.006895395],"category_scores_gemma":[0.00000664483,0.0001094469,0.0001217705,0.00007570819,0.00003535414,0.0009958631,0.00007467619,0.0001456404,0.0003290015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001580574,"about_ca_system_score_gemma":0.000009048596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003518137,"about_ca_topic_score_gemma":3.373877e-7,"domain_scores_codex":[0.9990371,0.00005243173,0.0003786937,0.0001501035,0.0001802211,0.0002014558],"domain_scores_gemma":[0.999473,0.000005249906,0.0002753957,0.0001313099,0.00000246108,0.0001125786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001363108,0.0006318023,0.001051113,6.862269e-7,0.00001844798,0.00001521089,0.0008356093,0.000008589902,0.986478,0.00000676324,0.00896215,0.001855369],"study_design_scores_gemma":[0.001198788,0.0004833439,0.1395538,0.00002763019,0.00002433822,0.000271744,0.0004507023,0.00001773122,0.7131582,0.00009535504,0.1445134,0.0002049664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969274,0.0002007101,0.0001006336,0.0003323714,0.0005590727,0.0001067143,0.000004744831,0.00001589737,0.001752423],"genre_scores_gemma":[0.9954552,0.000167747,0.001582198,0.0007557301,0.0001990833,0.000001479171,0.000006376965,0.00001492942,0.001817254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2733197,"threshold_uncertainty_score":0.9940124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01223372556481145,"score_gpt":0.3369217124802431,"score_spread":0.3246879869154317,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}