{"id":"W2017886758","doi":"10.1126/science.1202142","title":"Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene","year":2011,"lang":"en","type":"article","venue":"Science","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":723,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Institute of General Medical Sciences; U.S. Public Health Service; Howard Hughes Medical Institute","keywords":"Yeast; Elongation; Gene; Transcription (linguistics); Gene expression; Biology; Endogeny; Transcription factor; TAF4; Genetics; Saccharomyces cerevisiae; Elongation factor; Cell biology; Promoter; RNA; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003188202,0.00005225858,0.00005355094,0.00005885813,0.00007482432,0.000008252165,0.00009170534,0.00003848375,0.00001067915],"category_scores_gemma":[0.00001751753,0.00005205949,0.00001819869,0.0001919554,0.0001285569,0.00001683743,0.00001163832,0.00001506995,0.0000029911],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001061395,"about_ca_system_score_gemma":0.00004847812,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002256373,"about_ca_topic_score_gemma":0.00001171327,"domain_scores_codex":[0.999417,0.000033193,0.000106226,0.0002142813,0.0001371054,0.00009221659],"domain_scores_gemma":[0.9995962,0.000001376011,0.00006969721,0.0001857802,0.0001040305,0.00004289836],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001720144,0.00002519108,0.002251075,0.000002383755,0.000003344038,1.502729e-7,0.000227672,0.0001112864,0.9952189,0.00007351356,0.000001684354,0.002067583],"study_design_scores_gemma":[0.00008210821,0.0001895593,0.1768276,0.000002808928,0.00001090152,0.000002754278,0.00002523846,0.001033108,0.8216595,0.000102727,0.00001335301,0.00005030175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986825,0.00002934663,0.000536215,0.000004943862,0.00002988913,0.00006503073,0.000003347018,0.000005684655,0.0006430686],"genre_scores_gemma":[0.9977667,0.00007036895,0.00203159,0.00001675767,0.00003609252,0.000003144132,0.00004420055,0.000004345043,0.00002685395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1745765,"threshold_uncertainty_score":0.2122924,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03997113628275893,"score_gpt":0.2352241977031899,"score_spread":0.195253061420431,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}