{"id":"W2017920360","doi":"10.1371/journal.pone.0046662","title":"Framing the Salmonidae Family Phylogenetic Portrait: A More Complete Picture from Increased Taxon Sampling","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":264,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Université Laval","funders":"Canada Research Chairs","keywords":"Biology; Evolutionary biology; Phylogenetic tree; Phylogenetics; Taxon; Clade; Sister group; Human evolutionary genetics; Salmonidae; Ecology; Genetics; Gene; Fishery; Fish <Actinopterygii>; Rainbow trout","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006669689,0.0007191031,0.001159202,0.003757373,0.001209962,0.002352688,0.0009407879,0.001291883,0.002834257],"category_scores_gemma":[0.007804093,0.0004727925,0.0006077674,0.002463171,0.001955681,0.009532556,0.003840881,0.003628509,0.0007021858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001021624,"about_ca_system_score_gemma":0.0005580755,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002351617,"about_ca_topic_score_gemma":0.006287968,"domain_scores_codex":[0.9976649,0.001065916,0.000192161,0.0006790658,0.000304012,0.00009387721],"domain_scores_gemma":[0.9948251,0.0018721,0.0009181763,0.0009107982,0.00093472,0.000539137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0008635713,0.00009711722,0.2861054,0.003343793,0.0009294733,0.001738592,0.03357248,0.00462226,0.08483004,0.02497757,0.01892501,0.5399947],"study_design_scores_gemma":[0.0000415654,0.0003990238,0.7209542,0.00164135,0.0005435921,0.002937882,0.0164082,0.007581999,0.004364598,0.06237141,0.1824834,0.0002729004],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7526425,0.08731791,0.0907499,0.05426409,0.001580054,0.00008181731,0.004026578,0.0005154927,0.008821664],"genre_scores_gemma":[0.8732935,0.03333582,0.07399891,0.01035674,0.002636686,0.0002025656,0.004040124,0.0003673078,0.001768471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006669689,"threshold_uncertainty_score":0.03527308,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05341535853345809,"score_gpt":0.2368977039402649,"score_spread":0.1834823454068067,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}