{"id":"W2017962615","doi":"10.1371/journal.pone.0111872","title":"Metabolomic Profiling in Cattle Experimentally Infected with Mycobacterium avium subsp. paratuberculosis","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Alberta Cancer Foundation; Dairy Farmers of Canada","keywords":"Paratuberculosis; Metabolomics; Subclinical infection; Biology; Metabolite; Feces; Metabolome; Veterinary medicine; Microbiology; Mycobacterium; Virology; Medicine; Endocrinology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002663185,0.0002379541,0.0006094507,0.0002376024,0.00005366979,0.00005117665,0.0001197691,0.0001136463,0.0004651314],"category_scores_gemma":[0.0002975325,0.0001910965,0.00006072479,0.0004110977,0.00008145154,0.0001773032,0.00006741854,0.0003232954,0.0002330681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001222998,"about_ca_system_score_gemma":0.0001344625,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002238909,"about_ca_topic_score_gemma":0.00008546667,"domain_scores_codex":[0.9980395,0.0001324233,0.0003042881,0.0004206184,0.0005321057,0.0005710875],"domain_scores_gemma":[0.998834,0.0001464094,0.00006967934,0.0004615673,0.000157905,0.0003304748],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004881968,0.002025521,0.4315413,0.0002170239,0.0001965615,0.00001708584,0.0001327998,8.27935e-7,0.565179,0.00004824948,0.00008998428,0.00006344371],"study_design_scores_gemma":[0.002063212,0.0007123191,0.3314458,0.0003122722,0.0001763147,0.000008314463,0.00004981817,0.0001391286,0.6647983,0.000008933667,0.00009220692,0.0001934382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945979,0.000265531,0.00001250525,0.0006521106,0.00003260059,0.0008256879,0.00001520368,0.0001149828,0.003483546],"genre_scores_gemma":[0.9951158,0.0001582539,0.003324255,0.0003654361,0.0001915417,0.0004071531,0.0001606002,0.00005055998,0.0002264326],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1000956,"threshold_uncertainty_score":0.7792689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03136935638512366,"score_gpt":0.2601641189218254,"score_spread":0.2287947625367017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}