{"id":"W2017962615","doi":"10.1371/journal.pone.0111872","title":"Metabolomic Profiling in Cattle Experimentally Infected with Mycobacterium avium subsp. paratuberculosis","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Alberta Cancer Foundation; Dairy Farmers of Canada","keywords":"Paratuberculosis; Metabolomics; Subclinical infection; Biology; Metabolite; Feces; Metabolome; Veterinary medicine; Microbiology; Mycobacterium; Virology; Medicine; Endocrinology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002161437,0.0002034475,0.0003358119,0.0003823676,0.0001867756,0.0003631488,0.0001047684,0.0002406521,0.000213622],"category_scores_gemma":[0.000249992,0.0001179923,0.0001566858,0.0002946733,0.000165448,0.0001416146,0.0001299427,0.0002783115,0.00006877061],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001931833,"about_ca_system_score_gemma":0.0001329448,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002180124,"about_ca_topic_score_gemma":0.002829976,"domain_scores_codex":[0.9998891,0.00002101994,0.000005577167,0.00002883082,0.00002323469,0.00003211174],"domain_scores_gemma":[0.9998423,0.000038257,0.00004275393,0.000007992343,0.00003485419,0.00003381027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001826197,0.000163457,0.05652856,0.00005437648,0.00004638805,0.0001057071,0.0002335673,0.0001971901,0.93665,0.00001821915,0.00002376294,0.004152703],"study_design_scores_gemma":[0.00001198592,0.002239345,0.9064435,0.00001363185,0.0001194338,0.0002405147,0.0005431339,0.002525696,0.08749171,0.00004026651,0.0003155273,0.00001531132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995782,0.0001058817,0.000154006,0.000004497112,0.000001204649,0.000002982163,0.0001125922,0.00000233675,0.00003840369],"genre_scores_gemma":[0.9984552,0.0001817102,0.000626472,0.00001938891,0.000002858637,0.00001093436,0.0004553349,0.00000266199,0.0002454533],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002180124,"threshold_uncertainty_score":0.004334807,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03136935638512366,"score_gpt":0.2601641189218254,"score_spread":0.2287947625367017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}