{"id":"W2018383140","doi":"10.4161/mge.20110","title":"Endosymbiotic and horizontal gene transfer in microbial eukaryotes","year":2012,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; University of New Brunswick","funders":"","keywords":"Endosymbiosis; Horizontal gene transfer; Eukaryote; Biology; Plastid; Evolutionary biology; Gene; Tree of life (biology); Genome; Algae; Phylogenetics; Diatom; Ecology; Genetics; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001124314,0.0001343667,0.0001092329,0.00003889879,0.00005655511,0.00001228982,0.0001179598,0.00009898515,0.00006627744],"category_scores_gemma":[0.000005344923,0.0001459508,0.00004030373,0.00005143179,0.00005233895,0.000004386058,0.0001015836,0.000060679,0.00001837649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001380973,"about_ca_system_score_gemma":0.00001860504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003505575,"about_ca_topic_score_gemma":0.00004252784,"domain_scores_codex":[0.9991134,0.00004835973,0.0001641308,0.0002337918,0.00007966068,0.000360657],"domain_scores_gemma":[0.9997035,0.000004189898,0.00001740614,0.0001586498,0.0000132391,0.0001029751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000298891,0.00009703567,0.4320739,0.00001101462,0.00002344095,0.000002623777,0.0001039569,0.000003011749,0.5646528,0.000004937581,0.00009780444,0.002899599],"study_design_scores_gemma":[0.001193826,0.0003662113,0.341375,0.000006512979,0.0000221169,0.00002586921,0.00006147643,0.00000465632,0.6530986,0.00001191362,0.003616662,0.0002171941],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965756,0.002454651,0.0002334957,0.00000835432,0.000159568,0.0003753096,0.00005132051,0.000005069366,0.0001366489],"genre_scores_gemma":[0.9981237,0.0002872635,0.001059058,0.0001211729,0.0001741868,0.00003555687,0.00008580077,0.00001319187,0.0001000746],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09069896,"threshold_uncertainty_score":0.59517,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005719589685210877,"score_gpt":0.2092611655765394,"score_spread":0.2035415758913285,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}