{"id":"W2018392282","doi":"10.1139/gen-2014-0138","title":"Identification of nuclear low-copy genes and their phylogenetic utility in rosids","year":2014,"lang":"en","type":"article","venue":"Genome","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Phylogenetic tree; Biology; Clade; Genetics; Nuclear gene; Genome; Phylogenetics; Phylogenomics; Phylogenetic network; Gene; Mitochondrial DNA; Evolutionary biology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003133059,0.0002056298,0.0003100427,0.001013296,0.0003642522,0.0005077489,0.000314692,0.0002960607,0.0007203319],"category_scores_gemma":[0.0008263399,0.0001228537,0.000201351,0.000693903,0.0002801795,0.0003878959,0.0003580589,0.0003387636,0.0003457252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002412128,"about_ca_system_score_gemma":0.0001588762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006098459,"about_ca_topic_score_gemma":0.001437066,"domain_scores_codex":[0.9998142,0.00002385102,0.00001662065,0.00009827215,0.00002903233,0.00001805981],"domain_scores_gemma":[0.9994294,0.0001851584,0.0001872145,0.00007272937,0.0000701081,0.00005539601],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002367569,0.00002185887,0.0668851,0.0002368475,0.00002866977,0.0002063241,0.0004138383,0.0003066031,0.914196,0.000311427,0.00003796172,0.01711871],"study_design_scores_gemma":[0.00003565886,0.0003260381,0.8069626,0.0001983009,0.00018787,0.002235304,0.001527437,0.008106553,0.1673746,0.002157733,0.01082407,0.00006388117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936246,0.001204853,0.003400539,0.00004695967,0.000008231949,0.000008933481,0.0007880767,0.00003165642,0.0008862444],"genre_scores_gemma":[0.9933895,0.0003335889,0.004540198,0.00002413646,0.000006142649,0.00001057352,0.001317555,0.00001549209,0.0003628924],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001013296,"threshold_uncertainty_score":0.002409697,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01359084429913982,"score_gpt":0.1700008834506669,"score_spread":0.1564100391515271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}