{"id":"W2018694869","doi":"10.3389/fcimb.2012.00098","title":"Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution","year":2012,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Islamia University of Bahawalpur","keywords":"Phylogenetics; Darwinism; Biology; Computational biology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001013137,0.0007096978,0.0010522,0.002210399,0.0003528846,0.00108005,0.0005305578,0.001186699,0.0006636755],"category_scores_gemma":[0.002242136,0.0002932395,0.0004246469,0.002585006,0.0009890835,0.002494878,0.0006300063,0.001802516,0.0009100565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003550038,"about_ca_system_score_gemma":0.0004456038,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002609763,"about_ca_topic_score_gemma":0.0003059419,"domain_scores_codex":[0.9995025,0.00008788652,0.00006104221,0.0001382243,0.0001769495,0.00003342458],"domain_scores_gemma":[0.9982889,0.0006863111,0.000576686,0.0001214697,0.000265261,0.0000613589],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003159047,0.00008408277,0.03796832,0.008936391,0.0004092616,0.001246617,0.0005239641,0.003537393,0.4999775,0.02401731,0.0026398,0.4203435],"study_design_scores_gemma":[0.00003693639,0.001019103,0.1472094,0.001728475,0.0009775892,0.007367968,0.001606268,0.01122342,0.3333363,0.07225308,0.4228701,0.0003713062],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.190448,0.5283279,0.2580377,0.002850183,0.001173951,0.0002038052,0.005399466,0.0008819532,0.01267711],"genre_scores_gemma":[0.4555178,0.2722256,0.2597531,0.001300637,0.0008378697,0.0001818157,0.006305243,0.0001932153,0.003684662],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002210399,"threshold_uncertainty_score":0.005357981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01143618807864639,"score_gpt":0.234070955206979,"score_spread":0.2226347671283326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}