{"id":"W2018860871","doi":"10.1128/jcm.00585-06","title":"Evaluation of In Situ Methods Used To Detect <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> in Samples from Patients with Crohn's Disease","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation; McGill University","keywords":"Paratuberculosis; Bacilli; Mycobacterium; Biology; Microbiology; Staining; Ziehl–Neelsen stain; Mycobacterium tuberculosis; Mycobacterium avium subspecies paratuberculosis; Virology; Bacteria; Tuberculosis; Pathology; Sputum; Acid-fast; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001801244,0.0005149168,0.0004621798,0.0007806564,0.0002775415,0.0006164514,0.000328914,0.0005976133,0.00101467],"category_scores_gemma":[0.001907917,0.000303705,0.0002978912,0.0005862651,0.0004679686,0.0002822697,0.0002666588,0.0004988147,0.0003517344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000213589,"about_ca_system_score_gemma":0.0001578051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003115798,"about_ca_topic_score_gemma":0.0006168613,"domain_scores_codex":[0.9984766,0.0006381358,0.0001429436,0.0003430356,0.000230263,0.0001689577],"domain_scores_gemma":[0.9984071,0.000699691,0.0002961982,0.0001102558,0.0003669441,0.0001198049],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004927174,0.00008214106,0.02345553,0.0002875313,0.00005090566,0.0002574628,0.0003397769,0.00008614453,0.9703363,0.00005875045,0.00005142625,0.004501307],"study_design_scores_gemma":[0.0001010149,0.005694072,0.1926656,0.0001014022,0.0004875401,0.005473772,0.001621399,0.003459886,0.7855685,0.0001791583,0.004614742,0.00003293377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9829103,0.002240051,0.01255167,0.0001383298,0.0001031944,0.00007997117,0.0001980072,0.00009470709,0.001683617],"genre_scores_gemma":[0.9797007,0.001467994,0.01729604,0.0001298505,0.00006065355,0.0001216031,0.0004263768,0.00003308926,0.0007637053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001801244,"threshold_uncertainty_score":0.009525955,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07181691117825274,"score_gpt":0.4166858180191532,"score_spread":0.3448689068409004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}