{"id":"W2018860871","doi":"10.1128/jcm.00585-06","title":"Evaluation of In Situ Methods Used To Detect <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> in Samples from Patients with Crohn's Disease","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation; McGill University","keywords":"Paratuberculosis; Bacilli; Mycobacterium; Biology; Microbiology; Staining; Ziehl–Neelsen stain; Mycobacterium tuberculosis; Mycobacterium avium subspecies paratuberculosis; Virology; Bacteria; Tuberculosis; Pathology; Sputum; Acid-fast; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005759146,0.0001942776,0.001185422,0.0003593025,0.00001516636,0.00001337991,0.0001964076,0.0002275936,0.0001450463],"category_scores_gemma":[0.005155141,0.0001372516,0.0002598267,0.0003824182,0.0001391831,0.00008859145,0.00006643887,0.0005624124,0.000009271358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000146376,"about_ca_system_score_gemma":0.0007050697,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003191333,"about_ca_topic_score_gemma":0.002025963,"domain_scores_codex":[0.9945424,0.002410954,0.002014253,0.0003265189,0.0003366723,0.0003691679],"domain_scores_gemma":[0.9950562,0.002514499,0.0006805393,0.0003040278,0.001093396,0.0003513418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005773307,0.001025266,0.8134848,0.00002697839,0.00008262867,0.00005611481,0.00002874723,0.00004918755,0.1719104,0.000001328834,0.0008119031,0.00674926],"study_design_scores_gemma":[0.009436137,0.001397355,0.9720424,0.0003238338,0.0003534754,0.00000799396,0.000009229717,0.000008078466,0.01511901,0.0003124349,0.0008607914,0.0001292427],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975138,0.0004820202,0.0001547723,0.0007618184,0.0002871551,0.0006110191,0.0001315162,0.000004339849,0.00005356415],"genre_scores_gemma":[0.9885422,0.0000486137,0.01062134,0.0003864698,0.0002603509,0.00001709894,0.0001009291,0.00001874845,0.000004270349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1585575,"threshold_uncertainty_score":0.6171557,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07181691117825274,"score_gpt":0.4166858180191532,"score_spread":0.3448689068409004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}