{"id":"W2019167847","doi":"10.1097/01.olq.0000431356.80840.d4","title":"Neisseria gonorrhoeae Multiantigen Sequence Typing Is Beneficial in Further Characterizing Gonococcal Populations in Alberta, Canada","year":2013,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; Alberta Health; Alberta Health Services","funders":"","keywords":"Cefixime; Neisseria gonorrhoeae; Gonorrhea; Medicine; Azithromycin; Microbiology; Multilocus sequence typing; Men who have sex with men; Typing; Antibiotic resistance; Antimicrobial; Biology; Veterinary medicine; Virology; Cephalosporin; Antibiotics; Genotype; Human immunodeficiency virus (HIV); Syphilis; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009340889,0.0002471573,0.0003010002,0.0002892455,0.0001488955,0.00004323299,0.0002507459,0.0001579809,0.002085891],"category_scores_gemma":[0.0001543027,0.000252035,0.00005955133,0.0005125095,0.0001119057,0.0004011898,0.00003067655,0.0004102141,0.0002818486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002358135,"about_ca_system_score_gemma":0.0006800704,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8422006,"about_ca_topic_score_gemma":0.7866457,"domain_scores_codex":[0.9980797,0.0002349859,0.0004587965,0.0005626356,0.00002964813,0.0006342368],"domain_scores_gemma":[0.9992169,0.0001777255,0.00006731299,0.0003658395,0.0001031809,0.00006902081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001453499,0.0004094006,0.7742179,0.00005296111,0.00009022159,0.000004572048,0.001578283,0.0001799458,0.203122,0.0001512592,0.0002594951,0.01978864],"study_design_scores_gemma":[0.000769368,0.00004072424,0.9934329,0.00004696549,0.00001667898,0.000009916838,0.0004802857,0.0001212185,0.00136556,0.0001409141,0.0032849,0.000290596],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955643,0.0006989994,0.00002602507,0.002118283,0.0004750686,0.000771133,0.0001119726,0.00004115487,0.0001930948],"genre_scores_gemma":[0.9984807,0.00002897351,0.00003314165,0.0003162348,0.00004419097,0.0002018933,0.0003011911,0.00003277804,0.0005608839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.219215,"threshold_uncertainty_score":0.9999932,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0291290235412818,"score_gpt":0.2875996936081581,"score_spread":0.2584706700668764,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}