{"id":"W2020066914","doi":"10.1371/journal.pone.0048176","title":"In Vitro Site Selection of a Consensus Binding Site for the Drosophila melanogaster Tbx20 Homolog Midline","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Alberta Children's Hospital","funders":"Canadian Institutes of Health Research","keywords":"Consensus sequence; Drosophila melanogaster; Biology; Binding site; DNA binding site; Conserved sequence; Transcription factor; Genetics; Sequence alignment; Sequence (biology); Computational biology; Peptide sequence; Gene; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004705386,0.0005045595,0.000677974,0.0003465082,0.0002361581,0.0002935648,0.0004872929,0.000294336,0.002944662],"category_scores_gemma":[0.0005553955,0.0004917146,0.0003904129,0.0002735544,0.0002075175,0.0001446611,0.0004788739,0.0008022201,0.001891137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000271113,"about_ca_system_score_gemma":0.0002639007,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006966558,"about_ca_topic_score_gemma":0.002192109,"domain_scores_codex":[0.9995616,0.0001193067,0.00004652534,0.00008871024,0.0001175714,0.00006625955],"domain_scores_gemma":[0.999492,0.0001736806,0.00008965156,0.00007478762,0.00006830941,0.0001015815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000239577,0.00001568334,0.0000918657,0.00001857841,0.000002125819,0.00002889191,0.00001145637,0.00004542012,0.9990395,0.00005955338,0.0000307165,0.0006323327],"study_design_scores_gemma":[0.00002344393,0.0001538357,0.001512388,0.000007235471,0.00002050276,0.0002423973,0.00002975854,0.0009887615,0.9933972,0.00005001521,0.003563728,0.00001070157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9370539,0.0009283983,0.05754387,0.0001419029,0.0001254674,0.0003294025,0.001261854,0.000422133,0.002193128],"genre_scores_gemma":[0.9002364,0.001029738,0.08406052,0.0001823885,0.00004234418,0.0003089067,0.006242635,0.0004278218,0.007469197],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002944662,"threshold_uncertainty_score":0.0098508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0195888733421156,"score_gpt":0.2250065705906919,"score_spread":0.2054176972485763,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}