{"id":"W2020131469","doi":"10.1093/jac/dkv061","title":"Assessment of multidrug resistance, clonality and virulence in non-PCV-13 <i>Streptococcus pneumoniae</i> serotypes in Canada, 2011–13","year":2015,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Shared Health; Health Sciences Centre; Public Health Agency of Canada; University of Manitoba","funders":"Pfizer Canada; Public Health Agency of Canada; Diagnostic Services Manitoba; University of Manitoba; Pfizer; Manitoba Health Research Council; GlaxoSmithKline","keywords":"Serotype; Streptococcus pneumoniae; Multilocus sequence typing; Microbiology; Biology; Virology; Virulence; Pulsed-field gel electrophoresis; Molecular epidemiology; Multiple drug resistance; Pneumococcal infections; Drug resistance; Genotype; Antibiotics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000490029,0.0003591339,0.0003037948,0.001845421,0.001215669,0.000980892,0.0006554635,0.0003376675,0.001029139],"category_scores_gemma":[0.001460019,0.0002198343,0.0003424036,0.002573189,0.0004953544,0.0001931507,0.0004584962,0.000366542,0.0001422237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009893751,"about_ca_system_score_gemma":0.01214291,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9646135,"about_ca_topic_score_gemma":0.9715018,"domain_scores_codex":[0.9992964,0.00003197218,0.00003525978,0.00009663976,0.0003504822,0.0001892616],"domain_scores_gemma":[0.9986309,0.00007028055,0.0002041505,0.00003384901,0.0008247957,0.000236014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001184379,0.00003123497,0.9893356,0.00003523774,0.00003964751,0.0001711646,0.0004978745,0.0001736439,0.003255293,0.00004966769,0.0002101151,0.006082141],"study_design_scores_gemma":[0.000002392538,0.00004349419,0.9980866,0.000009613174,0.00001247603,0.0001320594,0.0004940936,0.0002320831,0.0005538089,0.000006392173,0.0004225551,0.000004417556],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971992,0.0003388053,0.0001513592,0.00003877744,0.000002881347,0.00003726317,0.001147234,0.000007189788,0.00107731],"genre_scores_gemma":[0.9976352,0.0002801555,0.0003268032,0.00003547261,0.000001951664,0.000009770853,0.001094334,0.000003213898,0.0006130477],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0353865,"threshold_uncertainty_score":0.0717845,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01118313438571363,"score_gpt":0.2739785345339788,"score_spread":0.2627954001482652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}