{"id":"W2020131469","doi":"10.1093/jac/dkv061","title":"Assessment of multidrug resistance, clonality and virulence in non-PCV-13 <i>Streptococcus pneumoniae</i> serotypes in Canada, 2011–13","year":2015,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Shared Health; Health Sciences Centre; Public Health Agency of Canada; University of Manitoba","funders":"Pfizer Canada; Public Health Agency of Canada; Diagnostic Services Manitoba; University of Manitoba; Pfizer; Manitoba Health Research Council; GlaxoSmithKline","keywords":"Serotype; Streptococcus pneumoniae; Multilocus sequence typing; Microbiology; Biology; Virology; Virulence; Pulsed-field gel electrophoresis; Molecular epidemiology; Multiple drug resistance; Pneumococcal infections; Drug resistance; Genotype; Antibiotics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005082365,0.0001647473,0.0005707596,0.0001952333,0.00002670503,0.00001145003,0.0001132779,0.00008525218,0.00001766244],"category_scores_gemma":[0.00002764646,0.000136568,0.00008172898,0.0002126118,0.00008568139,0.0001389474,0.00001870206,0.0004230032,7.215222e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004391944,"about_ca_system_score_gemma":0.002281072,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.07095157,"about_ca_topic_score_gemma":0.3805809,"domain_scores_codex":[0.9985153,0.00007376295,0.0007317897,0.0001649297,0.0002957073,0.0002184748],"domain_scores_gemma":[0.9989405,0.00005268969,0.0004255556,0.0001681216,0.0002365652,0.0001765676],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001491683,0.0002342182,0.6299388,0.00007461666,0.00003559287,0.00009635944,0.0001767019,0.0001178525,0.3665126,0.000002322068,0.00241692,0.0002448584],"study_design_scores_gemma":[0.00529635,0.0001991346,0.9473639,0.0004911633,0.00002350475,0.0001125998,0.0001410349,0.0001146458,0.04229808,0.00002189632,0.003781606,0.0001560491],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953912,0.00009050186,0.00002944691,0.0034322,0.0002104082,0.0002530551,0.00001733077,0.000003439361,0.0005724106],"genre_scores_gemma":[0.9976507,0.0004227944,0.0003222801,0.001408293,0.00008485997,0.000002380563,0.000001325103,0.00001656915,0.00009080245],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3242145,"threshold_uncertainty_score":0.935235,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01118313438571363,"score_gpt":0.2739785345339788,"score_spread":0.2627954001482652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}