{"id":"W2020424190","doi":"10.1038/npre.2011.5627.1","title":"The BioGRID Interaction Database","year":2011,"lang":"en","type":"preprint","venue":"Nature Precedings","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Budding yeast; Biology; Schizosaccharomyces; Data curation; World Wide Web; Computational biology; Computer science; Database; Schizosaccharomyces pombe; Bioinformatics; Data science; Saccharomyces cerevisiae; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003678709,0.0002577728,0.0001479921,0.00003754425,0.0001643853,0.0001268759,0.000630416,0.001141426,0.00001883027],"category_scores_gemma":[0.00009368153,0.0001831475,0.0001634199,0.00004605393,0.00007889733,0.000004274516,0.001336292,0.001656605,0.00002030006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002156121,"about_ca_system_score_gemma":0.00007009879,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002099549,"about_ca_topic_score_gemma":0.00005089895,"domain_scores_codex":[0.9989146,0.00002694072,0.0002752459,0.000380897,0.0001292738,0.0002730371],"domain_scores_gemma":[0.9987838,0.00002049238,0.0002719617,0.0007223936,0.0001233133,0.00007803924],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008809638,0.0001249007,0.0004549242,0.0003742333,0.001026725,0.000004678127,0.0006823685,0.0001103564,0.09818453,0.006457038,0.8030741,0.08862523],"study_design_scores_gemma":[0.0002926217,0.0001051677,0.0001736463,0.0001637943,0.00008690925,0.00002843892,0.0001049678,0.000681153,0.06424851,0.00446691,0.9290807,0.0005671317],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5430868,0.09600127,0.02014646,0.005585748,0.0686207,0.005148358,0.001237958,0.0004039852,0.2597687],"genre_scores_gemma":[0.9869207,0.004946828,0.002289872,0.0007655023,0.002239716,0.00007058477,0.001488842,0.00004918234,0.001228809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4438339,"threshold_uncertainty_score":0.8803723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0108348116672116,"score_gpt":0.2627044380182527,"score_spread":0.251869626351041,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}