{"id":"W2020485360","doi":"10.1016/j.mimet.2011.08.015","title":"Identification of a Bacillus anthracis specific indel in the yeaC gene and development of a rapid pyrosequencing assay for distinguishing B. anthracis from the B. cereus group","year":2011,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Imperial College London","keywords":"Bacillus anthracis; Cereus; Bacillus cereus; Biology; Indel; Microbiology; Genetics; Gene; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006600366,0.0001178027,0.0003038002,0.00004242122,0.00008499506,0.00002172793,0.0004209707,0.0001616356,0.00001838195],"category_scores_gemma":[0.001319441,0.00006175887,0.0001092557,0.00009984311,0.0002374319,0.000007506687,0.0001121332,0.0001875392,1.943654e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001881619,"about_ca_system_score_gemma":0.00005968999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001673659,"about_ca_topic_score_gemma":0.00001063718,"domain_scores_codex":[0.9980015,0.000733843,0.0007961623,0.0001923829,0.00009842168,0.0001776836],"domain_scores_gemma":[0.9984695,0.0004888399,0.0005856346,0.0002006198,0.0002195576,0.00003582103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003401101,0.00008358903,0.0009755577,0.00001309402,0.00004492047,0.00000153546,0.001407746,7.014256e-7,0.9222718,0.00001620322,0.00004075447,0.07480391],"study_design_scores_gemma":[0.0005893527,0.0004087637,0.04115756,0.00003919647,0.00001802193,0.00003119345,0.0008630858,0.00001047054,0.9527743,0.0003904854,0.003617794,0.00009979547],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8675712,0.003036938,0.1289323,0.00003707893,0.0001392825,0.0002005988,0.00005399244,8.714354e-7,0.00002768313],"genre_scores_gemma":[0.8622001,0.0006692337,0.1369554,0.00002795332,0.0001161256,0.000006316628,0.00001580183,0.000006522459,0.000002466647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07470412,"threshold_uncertainty_score":0.2518454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1011379033423294,"score_gpt":0.3472798519103076,"score_spread":0.2461419485679782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}