{"id":"W2020558917","doi":"10.1021/pr050013h","title":"Robust Method for Proteome Analysis by MS/MS Using an Entire Translated Genome:  Demonstration on the Ciliome of<i>Tetrahymena</i><i>t</i><i>hermophila</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":120,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University; University of Toronto","funders":"","keywords":"Tetrahymena; Proteome; Genome; Computational biology; Biology; Proteomics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007358638,0.0007881889,0.0005583633,0.0006218875,0.0005253369,0.0006389235,0.0007457014,0.0007358372,0.001137173],"category_scores_gemma":[0.001002442,0.0003633281,0.0005495161,0.0005008643,0.0004047582,0.000453273,0.0006953607,0.0009731144,0.001629046],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002517025,"about_ca_system_score_gemma":0.0005180943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005878236,"about_ca_topic_score_gemma":0.001170826,"domain_scores_codex":[0.9995419,0.00004988877,0.00003767196,0.0001596654,0.0001781532,0.00003284585],"domain_scores_gemma":[0.9995996,0.0001090014,0.00005963669,0.00008212316,0.0001033982,0.00004629236],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003579313,0.00001359444,0.0001566511,0.00005033637,0.00001032764,0.00008495392,0.00001830048,0.00006086445,0.9964066,0.00006357654,0.00009640257,0.003002642],"study_design_scores_gemma":[0.0000298414,0.0001834625,0.006544138,0.00001656032,0.00006785324,0.001558671,0.0000547551,0.005000852,0.9808848,0.0003036769,0.005322046,0.0000333804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3150705,0.002195175,0.6725513,0.0006908111,0.0001997043,0.0006534714,0.003200603,0.003508404,0.001930009],"genre_scores_gemma":[0.2224366,0.00169208,0.7677607,0.0003735325,0.00005410563,0.0008021177,0.004521688,0.0005418621,0.001817408],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.001137173,"threshold_uncertainty_score":0.003891647,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09965045974532191,"score_gpt":0.3684659537830527,"score_spread":0.2688154940377309,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}